Plant FIBer expression Database

Lus10025665 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G80480 573 / 0 PTAC17 plastid transcriptionally active 17 (.1)
AT1G15730 543 / 0 Cobalamin biosynthesis CobW-like protein (.1)
AT1G26520 243 / 5e-76 Cobalamin biosynthesis CobW-like protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018172
[exp]
706 / 0 AT1G80480 610 / 0.0 plastid transcriptionally active 17 (.1)
Lus10004653
[exp]
238 / 3e-74 AT1G26520 540 / 0.0 Cobalamin biosynthesis CobW-like protein (.1)
Lus10026658
[exp]
238 / 3e-74 AT1G26520 539 / 0.0 Cobalamin biosynthesis CobW-like protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G030100
[exp]
579 / 0 AT1G80480 607 / 0.0 plastid transcriptionally active 17 (.1)
Potri.001G201400
[exp]
414 / 1e-141 AT1G80480 442 / 6e-153 plastid transcriptionally active 17 (.1)
Potri.001G133500
[exp]
411 / 2e-141 AT1G80480 416 / 2e-143 plastid transcriptionally active 17 (.1)
Potri.008G094100
[exp]
181 / 2e-52 AT1G26520 496 / 9e-177 Cobalamin biosynthesis CobW-like protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07683 CobW_C Cobalamin synthesis protein cobW C-terminal domain
CL0023 P-loop_NTPase PF02492 cobW CobW/HypB/UreG, nucleotide-binding domain
Representative CDS sequence
>Lus10025665 pacid=23144937 polypeptide=Lus10025665 locus=Lus10025665.g ID=Lus10025665.BGIv1.0 annot-version=v1.0
ATGGCGCCGATGTCACTGGAGCTCGCTACAACGTTCCTCACCTTCGCTTCCCGCAACCAAACTCCTCTTCTCAGAACCCGCACCAGTCCCATACTTCCTC
TCTTCTCCACACTCCCCAAGGCGGCTTCATCTTCCACCACTACTACTATTACTCGCTCCGTCAAGTCCTCCGCCGTTCCCTTCCGTTTCTCCGTCAGACC
TACTTCCGCCGCCCGCAGAAGATTCTCCGCCAAGTCATCCTCCGCCGCAACCACCGCGTACAGCGAGGAATCCGATGTCACCACGAAAATCCCCCGCGAT
GATCGGATTCCCGCGACTATCATCACCGGGTTCCTCGGCTCTGGAAAGACGACTTTGCTTAATCATATTTTGACTGGAGAGCACGGGAAGCGCATAGCTG
TAATCGAGAACGAGTATGGTGAGGTTGATATCGATGGTTCGTTAGTTGCTGCGAAGACGACTGGAGCGGAGGACATAGTCATGTTGAACAATGGTTGTTT
GTGTTGTACTGTGAGGGGTGACCTTGTTAGAATGATTGCAGAGCTGGTTAATAAGAAGAAAGGAAAGTTTGATCATATTGTGATAGAAACGACTGGGTTG
GCAAATCCAGCACCGATCATTCAGACCTTTTACGCAGAGGATCAAGTTTTTAATGATGTCAAGTTGGATGGTGTTGTCACTTTGGTTGATGCTAAGCATG
CTGCCTTACATCTGGATGAGGTCAAGCCAAAGGGGATAGTCAATGAAGCAGTTGAGCAAATTGCATATGCCGATAGGATCATCGTAAACAAGACTGATCT
TGTTGGAGAGCAGGACCTTGGTCCCCTAGTGCAGAAAATAAGGACTATTAATAGCATGGCTGAGATGAAAAGGACCCAATTCGGACAAGTTGACTTGGAT
TACGTACTAGGCATTGGAGGCTTTGATTTGGAGAGGATTGAGACTGCAGTCGATGTAGACGGAAAGAAAGATGATGCGGTTCATGACCATGACCACCATC
ACCATCATGAGGAACATGACCACCACCATCACCATGAACATGACCACAAGCATGAACACAATGATGGGCATCACCACACACACGATCACACTCACGATCC
TGGTGTTTCTTCAATGAGCATTGTTTGCGAGGGGGTGTTGGACCTAGAGAAGGCTAACATGTGGCTAGGCACATTGCTGATGGAACAGAGTGAGGACATA
TACAGGATGAAAGGGCTTTTGTCTGTTCAGGGCATGGATGAGAGATTTGTGTTCCAGGGAGTTCACGACATCTTCCAAGGCTCGCCGGATCGGCCATGGG
GGCCGGAAGAAGCGAGGATCAACAAGATTGTGTTCATAGGGAAGAACTTGAACAAGGAGGAGATTGAGAAGGGGTTCCGTGCCTGTTTACTCTGA
AA sequence
>Lus10025665 pacid=23144937 polypeptide=Lus10025665 locus=Lus10025665.g ID=Lus10025665.BGIv1.0 annot-version=v1.0
MAPMSLELATTFLTFASRNQTPLLRTRTSPILPLFSTLPKAASSSTTTTITRSVKSSAVPFRFSVRPTSAARRRFSAKSSSAATTAYSEESDVTTKIPRD
DRIPATIITGFLGSGKTTLLNHILTGEHGKRIAVIENEYGEVDIDGSLVAAKTTGAEDIVMLNNGCLCCTVRGDLVRMIAELVNKKKGKFDHIVIETTGL
ANPAPIIQTFYAEDQVFNDVKLDGVVTLVDAKHAALHLDEVKPKGIVNEAVEQIAYADRIIVNKTDLVGEQDLGPLVQKIRTINSMAEMKRTQFGQVDLD
YVLGIGGFDLERIETAVDVDGKKDDAVHDHDHHHHHEEHDHHHHHEHDHKHEHNDGHHHTHDHTHDPGVSSMSIVCEGVLDLEKANMWLGTLLMEQSEDI
YRMKGLLSVQGMDERFVFQGVHDIFQGSPDRPWGPEEARINKIVFIGKNLNKEEIEKGFRACLL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G80480 PTAC17 plastid transcriptionally acti... Lus10025665
[exp]
0 1
AT1G05750 PDE247, CLB19 pigment defective 247, Tetratr... Lus10013341
[exp]
1.7 0.9019
AT4G18520 Pentatricopeptide repeat (PPR)... Lus10029482
[exp]
2.8 0.8882
AT5G59100 Subtilisin-like serine endopep... Lus10042555
[exp]
3.2 0.8448
AT1G15510 VAC1, ATECB2 VANILLA CREAM 1, ARABIDOPSIS E... Lus10025009
[exp]
3.5 0.8632
AT4G10620 P-loop containing nucleoside t... Lus10035986
[exp]
5.7 0.8115
AT2G37320 Tetratricopeptide repeat (TPR)... Lus10009070
[exp]
6.0 0.8524
AT5G17780 alpha/beta-Hydrolases superfam... Lus10003871
[exp]
11.0 0.8203
AT5G64030 S-adenosyl-L-methionine-depend... Lus10020894
[exp]
12.7 0.7898
AT5G08510 Pentatricopeptide repeat (PPR)... Lus10005987
[exp]
13.5 0.8088
AT4G18520 Pentatricopeptide repeat (PPR)... Lus10039594
[exp]
13.7 0.8256

Lus10025665 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.