Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02230 217 / 4e-68 ATPP2-B1 phloem protein 2-B1 (.1) AT2G02240 205 / 6e-64 MEE66 maternal effect embryo arrest 66, F-box family protein (.1) AT1G09155 185 / 3e-56 ATPP2-B15 phloem protein 2-B15 (.1) AT5G24560 182 / 1e-55 ATPP2-B12 phloem protein 2-B12 (.1) AT2G02360 180 / 8e-55 ATPP2-B10 phloem protein 2-B10 (.1) AT2G02250 177 / 4e-53 ATPP2-B2 phloem protein 2-B2 (.1) AT1G80110 173 / 4e-52 ATPP2-B11 phloem protein 2-B11 (.1) AT1G56240 170 / 8e-51 ATPP2-B13 phloem protein 2-B13 (.1) AT1G56250 165 / 9e-49 ATPP2-B14 phloem protein 2-B14 (.1) AT2G02340 164 / 3e-48 ATPP2-B8 phloem protein 2-B8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018171 [exp] 514 / 0 AT2G02240 219 / 2e-69 maternal effect embryo arrest 66, F-box family protein (.1) Lus10042713 [exp] 336 / 5e-115 AT2G02230 235 / 1e-75 phloem protein 2-B1 (.1) Lus10029674 [exp] 333 / 4e-114 AT2G02230 237 / 2e-76 phloem protein 2-B1 (.1) Lus10023207 [exp] 213 / 5e-67 AT2G02240 213 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Lus10008898 [exp] 210 / 4e-66 AT5G24560 212 / 3e-68 phloem protein 2-B12 (.1) Lus10020674 [exp] 208 / 2e-65 AT1G09155 266 / 7e-89 phloem protein 2-B15 (.1) Lus10020673 [exp] 193 / 1e-59 AT1G09155 272 / 2e-91 phloem protein 2-B15 (.1) Lus10015208 [exp] 190 / 2e-58 AT1G09155 270 / 2e-90 phloem protein 2-B15 (.1) Lus10031484 [exp] 190 / 2e-57 AT1G09155 260 / 1e-85 phloem protein 2-B15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G267000 [exp] 304 / 2e-102 AT2G02240 239 / 1e-77 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G015800 [exp] 292 / 4e-98 AT2G02240 242 / 1e-78 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G016000 [exp] 241 / 3e-78 AT2G02250 220 / 2e-70 phloem protein 2-B2 (.1) Potri.005G022000 [exp] 222 / 9e-71 AT1G09155 290 / 4e-98 phloem protein 2-B15 (.1) Potri.013G012600 [exp] 207 / 3e-65 AT1G09155 281 / 1e-94 phloem protein 2-B15 (.1) Potri.006G266900 [exp] 202 / 6e-63 AT2G02240 215 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Potri.001G050100 [exp] 189 / 2e-58 AT2G02360 219 / 5e-71 phloem protein 2-B10 (.1) Potri.018G016100 [exp] 190 / 3e-58 AT2G02250 217 / 2e-69 phloem protein 2-B2 (.1) Potri.012G136200 [exp] 102 / 8e-25 AT5G52120 353 / 3e-123 phloem protein 2-A14 (.1) Potri.014G075800 [exp] 98 / 2e-23 AT3G61060 397 / 4e-140 phloem protein 2-A13 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025666 pacid=23145086 polypeptide=Lus10025666 locus=Lus10025666.g ID=Lus10025666.BGIv1.0 annot-version=v1.0 ATGCAAACGTGTAAACGCCTTCACACTTCACGGTCGCATCATCATCCTCCGTCGCCGCCGATAACGCTGGACATGAACGACCTCCCTGAAGACCTCATCG CCACCATCCTCTCCTTCACCGGCCCTCGGGAGTCGTGCCGCCTGGCGGTGATCTCCGCCACTTTCTGGTCGGCTTCGCTGTCCGATACTGTCTGGGACCG GTTCCTTCCCGCCGACTACCTCTCCATTCTCTCCGGCAATGGCGACGGCGAAAATGAAAACGACAATACTACTTCGTATGTCTCCAAGAAGGATCATTTC CTACGACTCTGCCACAACCCAACTCTAATTGATGGCGGTACAAAGAGTTTCTCGCTGGATAAACGGAGTGGGAAGAAATGCTTCATGATCTCCTGCAGGG ATCTCTACATTATATGGGGGGATACTCCTCGTTACTGGAAATGGATTCCTGATTCTGATTCCAGGTTTGGGGAAGCAGCTGAGCTAGTGGGAGTATGCTG GTTGGAGATCAAGGGCACAATCAGAACATCAATGCTGTCCCCTGCAACATTATACACGGCTTACTTGGTCTTCAAGCCAACCCAAGGATCGTATGGGTTC GACTACCAGCCAGTGGAGGTCTCGGTGGGGATCTCCGGGAGCAAGGAGTCGAAGACCGTCCGGACTGCGTTCCTGGATGGAGCAGGGGCCGAGCAGATGA GGAGGAGAGTCCAGGTAGTGGCTGCTCCTAGACGGTTGGGGTCCCTCCTCCGATTCAGCCGTGGTAGGGTGCTAGGGTTCCTCCCGCACGCTCCGGTGCA GGGAATGAGCAGCGACGACGGTGCCGGTGGTGGTGGAGCTCGAGCCGAAGGGATCTACCCTAAGGAAAGAGGGGATGGGTGGTTCGAAGTTGAGCTTGGT GACTTCTTGAGCAAGGAAGGTGAAGTTAGTGGGGAAGTGCTGGAAATGTGTGTTGCTGAGGTGAAAGGTGGGAATTGGAAAGGTGGCCTTGTTGTTCAAG GCATTGAGATCAGACCAAAAGATGGGTAA
AA sequence Show only first row Show all	>Lus10025666 pacid=23145086 polypeptide=Lus10025666 locus=Lus10025666.g ID=Lus10025666.BGIv1.0 annot-version=v1.0 MQTCKRLHTSRSHHHPPSPPITLDMNDLPEDLIATILSFTGPRESCRLAVISATFWSASLSDTVWDRFLPADYLSILSGNGDGENENDNTTSYVSKKDHF LRLCHNPTLIDGGTKSFSLDKRSGKKCFMISCRDLYIIWGDTPRYWKWIPDSDSRFGEAAELVGVCWLEIKGTIRTSMLSPATLYTAYLVFKPTQGSYGF DYQPVEVSVGISGSKESKTVRTAFLDGAGAEQMRRRVQVVAAPRRLGSLLRFSRGRVLGFLPHAPVQGMSSDDGAGGGGARAEGIYPKERGDGWFEVELG DFLSKEGEVSGEVLEMCVAEVKGGNWKGGLVVQGIEIRPKDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24560		ATPP2-B12	phloem protein 2-B12 (.1)		Lus10025666 [exp]	0	1
AT2G02230		ATPP2-B1	phloem protein 2-B1 (.1)		Lus10029674 [exp]	1.0	0.8506
AT1G69680			Mog1/PsbP/DUF1795-like photosy...		Lus10012837 [exp]	2.8	0.7995
AT2G28790			Pathogenesis-related thaumatin...		Lus10016572 [exp]	3.9	0.8067
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10023018 [exp]	4.5	0.8165
					Lus10009611 [exp]	6.0	0.7264
AT5G12890			UDP-Glycosyltransferase superf...		Lus10025513 [exp]	7.5	0.7352
AT2G27770			Plant protein of unknown funct...		Lus10009405 [exp]	9.7	0.7262
AT4G08330			unknown protein		Lus10018170 [exp]	11.2	0.7148
AT3G08690		ATUBC11, UBC11	ubiquitin-conjugating enzyme 1...		Lus10028700 [exp]	14.7	0.7902
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10025397 [exp]	15.7	0.7878

Compare expression of checked genes

Lus10025666 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.