Plant FIBer expression Database

Lus10025667 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G08330 127 / 1e-37 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018170
[exp]
246 / 3e-84 AT4G08330 163 / 6e-52 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G083600
[exp]
153 / 6e-48 AT4G08330 106 / 1e-29 unknown protein
Potri.005G178000
[exp]
140 / 9e-43 AT4G08330 138 / 3e-42 unknown protein
Potri.005G070600
[exp]
113 / 4e-32 AT4G08330 105 / 3e-29 unknown protein
Potri.014G197000
[exp]
88 / 8e-23 AT4G08330 113 / 4e-33 unknown protein
Potri.005G107700
[exp]
41 / 7e-05 AT2G17705 197 / 9e-67 unknown protein
PFAM info
Representative CDS sequence
>Lus10025667 pacid=23145091 polypeptide=Lus10025667 locus=Lus10025667.g ID=Lus10025667.BGIv1.0 annot-version=v1.0
ATGGAGACGTCGACGGCGGTTACCAGAGAGAATTACCTCAACGGGAATCACCACAGTCAGTCTTTCTCCTCCGCCTCTGCCTCCCAGAGACACGTTAACT
ACAGCTGTGGCACTTGTGGGTATGAGCTGAACTTAAGCTCTTCGAATCGCAACACCTCAACCATAGGCTCCAAATACGGGAAATCCATTAAGCGAGGGAT
CATATCGTTCTTCTACATCGACGAGAGCAGGTTCACCCTTGTCGACGAGCTGCAATGCATCCCTTTCTTCTCGAACAGATCGTGGCGCTTGTTTCGGAGA
AGAACCAAACTCCTCTGCCGTAAGTGTGGTAACCCGGTTGGCATTGCTTACGACGATGATGAAGCCCCTCCTGATTATCCTCTTGTGTCATCAGGCGGAT
CCGAGCTATCACCATCGCCAGGCATCGAAGCTACTACTACTACTAAACATAGGAAGTACGACATCAAGATCCGATCTTTACAGCCATCTGCGACAATGGA
GAGATTTGATAGTACCCCACATTATATGTGA
AA sequence
>Lus10025667 pacid=23145091 polypeptide=Lus10025667 locus=Lus10025667.g ID=Lus10025667.BGIv1.0 annot-version=v1.0
METSTAVTRENYLNGNHHSQSFSSASASQRHVNYSCGTCGYELNLSSSNRNTSTIGSKYGKSIKRGIISFFYIDESRFTLVDELQCIPFFSNRSWRLFRR
RTKLLCRKCGNPVGIAYDDDEAPPDYPLVSSGGSELSPSPGIEATTTTKHRKYDIKIRSLQPSATMERFDSTPHYM

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G08330 unknown protein Lus10025667
[exp]
0 1
AT3G08690 ATUBC11, UBC11 ubiquitin-conjugating enzyme 1... Lus10009422
[exp]
6.0 0.8692
AT3G55530 SDIR1 SALT- AND DROUGHT-INDUCED RING... Lus10004977
[exp]
15.9 0.8284
AT2G38610 RNA-binding KH domain-containi... Lus10021676
[exp]
16.5 0.7832
AT3G55530 SDIR1 SALT- AND DROUGHT-INDUCED RING... Lus10001568
[exp]
18.2 0.8277
AT2G25430 epsin N-terminal homology (ENT... Lus10002920
[exp]
19.2 0.8322
AT1G07400 HSP20-like chaperones superfam... Lus10016456
[exp]
26.6 0.8139
AT3G48700 ATCXE13 carboxyesterase 13 (.1) Lus10012073
[exp]
26.7 0.8205
AT4G09460 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) Lus10016948
[exp]
26.7 0.7701
AT3G04120 GAPC1, GAPC-1, ... glyceraldehyde-3-phosphate deh... Lus10006435
[exp]
27.6 0.7989
AT3G22950 ATARFC1 ADP-ribosylation factor C1 (.1... Lus10006632
[exp]
29.2 0.7663

Lus10025667 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.