Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44350 558 / 0 ILL6 IAA-leucine resistant (ILR)-like gene 6 (.1) AT1G51760 413 / 8e-142 JR3, IAR3 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) AT3G02875 406 / 4e-139 ILR1 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) AT5G56660 398 / 8e-136 ILL2 IAA-leucine resistant (ILR)-like 2 (.1) AT1G51780 382 / 2e-129 ILL5 IAA-leucine resistant (ILR)-like gene 5 (.1) AT5G56650 377 / 9e-128 ILL1 IAA-leucine resistant (ILR)-like 1 (.1) AT5G54140 375 / 3e-127 ILL3 IAA-leucine-resistant (ILR1)-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018169 [exp] 558 / 0 AT1G44350 423 / 3e-147 IAA-leucine resistant (ILR)-like gene 6 (.1) Lus10030659 [exp] 440 / 3e-152 AT1G51760 489 / 8e-172 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10030828 [exp] 436 / 2e-150 AT1G51760 489 / 6e-172 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10010715 [exp] 427 / 8e-147 AT1G51760 463 / 1e-161 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10029200 [exp] 424 / 8e-146 AT5G56660 469 / 8e-164 IAA-leucine resistant (ILR)-like 2 (.1) Lus10037601 [exp] 419 / 6e-144 AT1G51760 649 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10016998 [exp] 391 / 8e-133 AT3G02875 571 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Lus10032963 [exp] 383 / 5e-130 AT5G54140 545 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Lus10021321 [exp] 383 / 1e-129 AT3G02875 573 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G082400 [exp] 659 / 0 AT1G44350 609 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Potri.005G178900 [exp] 654 / 0 AT1G44350 604 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Potri.010G035900 [exp] 446 / 3e-154 AT1G51760 482 / 1e-168 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Potri.003G045200 [exp] 433 / 9e-150 AT1G51760 680 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Potri.016G074100 [exp] 408 / 3e-139 AT3G02875 508 / 1e-178 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.006G207400 [exp] 404 / 4e-138 AT3G02875 584 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.012G007400 [exp] 402 / 1e-137 AT5G54140 548 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Potri.015G004000 [exp] 393 / 1e-133 AT5G54140 520 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Potri.006G207300 [exp] 385 / 1e-130 AT3G02875 568 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0035 [flax] [poplar] Peptidase_MH PF01546 [flax] [poplar] Peptidase_M20 Peptidase family M20/M25/M40
Representative CDS sequence Show only first row Show all	>Lus10025668 pacid=23144964 polypeptide=Lus10025668 locus=Lus10025668.g ID=Lus10025668.BGIv1.0 annot-version=v1.0 ATGAACCCACAACAAAAAGCTTCAATCTTTATACTCTTCCTCTCCACCATCATCCTCACCACCACCATCTCCGATAACGAAACCAAAAACCGGCCATCTT CTTCCCCTTTCTACAACTCTCAACTACCCATCTCCTTCACCCAACTAACCAAAAACTGCTCCTCCTCCCCGAAAACCCAAAAACCACTCGTGGGGTGGAC CCACAAATGCTCCGCCTCCGTGCTGAAAGTGGCACGGAGACCGGAAAACGTGGGGTGGATAAAAAACTTGAGGAGGAAGATCCATGAGAACCCTGAGCTT GCCTTTGAGGAAGTCAAGACTAGTGCTTTGGTTAGAGATGAGCTTGACTCCATGGGTATCCGGTTCAAATACCCGCTAGCCAAAACCGGAATCCGGGCAT GGATCGGGTCGGGTTTTCCGCCGTTCGTTGCTCTCCGTGCCGACATGGATGCTCTTCCCATCCAGGAAGGAGTGGAGTGGGAGCACAAAAGCAAAGTAGA TGGGAAAATGCATGCTTGTGGCCATGATGCCCATGTTGCTATGCTCTTGGGTGCTGCCAAGATTTTGAAGACCCGTGAGCACCTTCTCAAGGGAACAGTA ATACTTTTGTTTCAGCCGGCGGAGGAAGCCGGGAACGGAGCGAAAAGGATGATCGCCGACGGAGCTCTGGAAGACGTGGAGGCTATTTTCGCTCTTCATG TTTCTCATGAACATCCCACCTCCGTCATCGGCTCCAGGCCTGGCCCTCTCCTTGCCGGCTGCGGATTCTTCCGTGCTGTCATTACTACACCGCGCCGCTC CTCCGGCTATCCCGTCTTAGCCGCCTCCGCCGCCATCATAAGCTTGCAGGGCATCGTTTCTCGCGAAGCTAATCCTTTGGACTCTCAGGTTGTCTCCGTC ACAACGGTCGACGGCGTATCCACCATGCCGGCGGCAACTGAGACCGTCGTTCTTGGAGGCACATTCAGGGCATTTTCCAACACAAGCTTCTACCATCTCC TTCACCGTATACGAGAGGTGATCGTGGAACAAGCAGCGGTGTACAGATGCGAGGCGAAAGTCAATTTCTTCGAGGAGGAATCGACGATCTACCCACCGAC GGTGAACGACGACAGAATGTACGAGCACGTTAAAAAAGTCGCGACCGACCTCCTCGGTCCGGCCAACTTCAGGGTGGTCCCGCCGATGATGGGAGCAGAG GATTTTTCCTTCTACTCGGCGGTGGTCCCTGCGGCGTTCTACTACATCGGGATCCGGAACGAGACGTTGGGGTCGACACACACGGGCCATTCGCCGCACT TCATGATCGATGAGGATGTTCTTCCGATTGGAGCTGCAACGCATGCGGCCGTTGCGGAGAGGTACTTGATAGGGTTTGGATGA
AA sequence Show only first row Show all	>Lus10025668 pacid=23144964 polypeptide=Lus10025668 locus=Lus10025668.g ID=Lus10025668.BGIv1.0 annot-version=v1.0 MNPQQKASIFILFLSTIILTTTISDNETKNRPSSSPFYNSQLPISFTQLTKNCSSSPKTQKPLVGWTHKCSASVLKVARRPENVGWIKNLRRKIHENPEL AFEEVKTSALVRDELDSMGIRFKYPLAKTGIRAWIGSGFPPFVALRADMDALPIQEGVEWEHKSKVDGKMHACGHDAHVAMLLGAAKILKTREHLLKGTV ILLFQPAEEAGNGAKRMIADGALEDVEAIFALHVSHEHPTSVIGSRPGPLLAGCGFFRAVITTPRRSSGYPVLAASAAIISLQGIVSREANPLDSQVVSV TTVDGVSTMPAATETVVLGGTFRAFSNTSFYHLLHRIREVIVEQAAVYRCEAKVNFFEEESTIYPPTVNDDRMYEHVKKVATDLLGPANFRVVPPMMGAE DFSFYSAVVPAAFYYIGIRNETLGSTHTGHSPHFMIDEDVLPIGAATHAAVAERYLIGFG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G44350		ILL6	IAA-leucine resistant (ILR)-li...		Lus10025668 [exp]	0	1
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Lus10020053 [exp]	4.6	0.8353
AT3G48240			Octicosapeptide/Phox/Bem1p fam...		Lus10043341 [exp]	5.8	0.7916
AT4G18593			dual specificity protein phosp...		Lus10022402 [exp]	6.2	0.8463
AT3G52060			Core-2/I-branching beta-1,6-N-...		Lus10028866 [exp]	13.8	0.8355
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10040925 [exp]	19.3	0.8235
AT3G05580		TOPP9	type one protein phosphatase 9...		Lus10015192 [exp]	21.3	0.8253
AT4G25380		AtSAP10, SAP10	Arabidopsis thaliana stress-as...		Lus10038901 [exp]	21.9	0.7906
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10037672 [exp]	28.7	0.7916
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10009819 [exp]	33.9	0.8091
AT3G52105			unknown protein		Lus10012208 [exp]	33.9	0.8225

Compare expression of checked genes

Lus10025668 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.