Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01580 85 / 4e-19 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18960 85 / 4e-19 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18990 86 / 3e-18 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT1G49475 76 / 4e-16 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G31690 57 / 1e-08 B3 REM9 Transcriptional factor B3 family protein (.1) AT3G53310 54 / 4e-08 B3 REM20 AP2/B3-like transcriptional factor family protein (.1) AT2G16210 53 / 5e-08 B3 Transcriptional factor B3 family protein (.1.2) AT4G31680 52 / 3e-07 B3 REM8 Transcriptional factor B3 family protein (.1) AT4G31640 50 / 9e-07 B3 REM5 transcriptional factor B3 family protein (.1) AT2G35310 47 / 1e-05 B3 Transcriptional factor B3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010759 [exp] 138 / 2e-37 AT3G18990 91 / 1e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10035637 [exp] 136 / 5e-35 AT3G18990 91 / 9e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10002425 [exp] 123 / 2e-33 AT4G01580 85 / 1e-20 AP2/B3-like transcriptional factor family protein (.1) Lus10010756 [exp] 126 / 5e-33 AT3G18990 99 / 2e-23 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10027943 [exp] 107 / 2e-25 AT3G18960 76 / 9e-16 AP2/B3-like transcriptional factor family protein (.1) Lus10012046 [exp] 96 / 2e-21 AT3G18960 82 / 7e-18 AP2/B3-like transcriptional factor family protein (.1) Lus10041961 [exp] 89 / 6e-20 AT3G18990 94 / 3e-22 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10017970 [exp] 88 / 2e-19 AT3G18990 90 / 1e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10023844 [exp] 84 / 1e-18 AT3G18990 179 / 1e-55 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191500 [exp] 104 / 1e-24 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 88 / 5e-19 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.004G147000 [exp] 86 / 4e-18 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.009G108500 [exp] 79 / 8e-16 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G230100 [exp] 79 / 1e-15 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.007G035700 [exp] 71 / 4e-14 AT4G01580 71 / 4e-15 AP2/B3-like transcriptional factor family protein (.1) Potri.014G057101 [exp] 66 / 4e-12 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 63 / 8e-11 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G036800 [exp] 56 / 3e-08 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.002G129800 [exp] 54 / 8e-08 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10025669 pacid=23145084 polypeptide=Lus10025669 locus=Lus10025669.g ID=Lus10025669.BGIv1.0 annot-version=v1.0 ATGGCTGAAGCCGGAGTTCCCCTCAGTGGCTCCGCCGCCACCGCCGCTGCAAATTTTCCTGATCAGCAGCTGCCGTCTCCCATTATGCACAAACCTTATC TGTCATTCTTCAGAGTCATCCTTCCTTGCGTCCTTCAAGAGCAGAAGCTGAAGCTTCCCCTGCATTTTGTGCGGACACACGGGGAGGAGCTCGGTTCGAC CGCCAAGCTCTCGTTGCAGAACGGCTGCTCATGGGAAGTCACCGTGGAGAAAGGACAAAACGACGATGTTTGGCTGATGAAAGGATGGTCAGAGTTCGTG GAACGCCACTCGATTTCGAATGGTTTCTTCCTGGTGTTTGATTTCCTCGGTCGGAACGAGTTCAAGGTGCAGATTTTCAACTTGACCACCTGCTCGATCC ACTACCCGGAATCTGATGAGAAGAAAGGGCAACAGGAAGATGAACAAGAACAAGCAAGCTCGGCGAAATGCAGCGTGGTTGTGATATCGGGTGATGAAGA AAATGGTGAAGATTCGAGTCGAGGAGATTGTGAGTTTGTTGAGTCTGATCGATCTGATCCTGAACTAGGGAGAAGCAGGAAGAGGATTGCTAAACGTAGA AGGAAAAAGAGTCTACCAAATAAGAAAGCAGCAGCTTCTTCTTCGTCAGGATTTGAGTCTGAAACCTGTAAGCATCAGGATTCTCAATCGGGTGAGACCG AGAGTGACCAACTGCTGAAGCTAGTGAAATCAAGAGGGATATATACAAGTGCAAAGTTCCCATCCACACTGTGCAAGATGTACAACCAATGCGGCAAAGG AGTAAAGGCAGCAGCAGCACTTCAACTGATCGCAAACCCTAAAACCCCATGTTTCATTGCTGTTATGAGCATGAGAGGAGATAGTACTCAACGTGTGATG ACCCCTACGATACCAGCTTCGTTCATTAGAAACCACATTCGAGGCGAGTGGAAGAGCGTGACGCTCGTAAACCAGGAGCAGCAGAGGTGGGATGTTGATA CAGAGAAGAACACCAATAGCGCAGGGGGGCTGCTAATGGGGTACGGATGGACCCATTTCCACAAAGACAACAGCTTGGGAAGTGCAGATGTTTGCCTCTT TCAGCTCGTTCCCGACCAGGAACGTCTGTTGCGAGTTTCGGTGTTTAGTGCCTCTTCAGCTCCATCCTCTGCTTCTTCCAATGCTGCGCTCTGA
AA sequence Show only first row Show all	>Lus10025669 pacid=23145084 polypeptide=Lus10025669 locus=Lus10025669.g ID=Lus10025669.BGIv1.0 annot-version=v1.0 MAEAGVPLSGSAATAAANFPDQQLPSPIMHKPYLSFFRVILPCVLQEQKLKLPLHFVRTHGEELGSTAKLSLQNGCSWEVTVEKGQNDDVWLMKGWSEFV ERHSISNGFFLVFDFLGRNEFKVQIFNLTTCSIHYPESDEKKGQQEDEQEQASSAKCSVVVISGDEENGEDSSRGDCEFVESDRSDPELGRSRKRIAKRR RKKSLPNKKAAASSSSGFESETCKHQDSQSGETESDQLLKLVKSRGIYTSAKFPSTLCKMYNQCGKGVKAAAALQLIANPKTPCFIAVMSMRGDSTQRVM TPTIPASFIRNHIRGEWKSVTLVNQEQQRWDVDTEKNTNSAGGLLMGYGWTHFHKDNSLGSADVCLFQLVPDQERLLRVSVFSASSAPSSASSNAAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10025669 [exp]	0	1
					Lus10003536 [exp]	3.6	1.0000
					Lus10011425 [exp]	5.1	1.0000
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10031524 [exp]	6.5	1.0000
					Lus10029107 [exp]	8.9	1.0000
					Lus10028667 [exp]	11.7	1.0000
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10023431 [exp]	12.6	1.0000
					Lus10009727 [exp]	14.3	1.0000
AT5G54010			UDP-Glycosyltransferase superf...		Lus10039237 [exp]	14.7	1.0000
AT3G49720			unknown protein		Lus10012481 [exp]	15.5	1.0000
AT1G21850		SKS8	SKU5 similar 8 (.1)		Lus10022648 [exp]	17.4	0.9920

Compare expression of checked genes

Lus10025669 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.