Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19950 74 / 4e-15 RING/U-box superfamily protein (.1) AT1G18760 73 / 4e-15 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT2G29840 74 / 5e-15 RING/U-box superfamily protein (.1) AT3G13228 72 / 1e-14 RING/U-box superfamily protein (.1) AT5G64920 71 / 5e-14 CIP8 COP1-interacting protein 8 (.1) AT1G14200 69 / 5e-14 RING/U-box superfamily protein (.1) AT1G18770 66 / 7e-14 RING/U-box superfamily protein (.1) AT5G15820 71 / 8e-14 RING/U-box superfamily protein (.1) AT3G13430 68 / 5e-13 RING/U-box superfamily protein (.1.2.3) AT3G02340 68 / 6e-13 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018167 [exp] 425 / 9e-153 AT3G19950 75 / 1e-15 RING/U-box superfamily protein (.1) Lus10012819 [exp] 73 / 5e-15 AT1G26800 182 / 6e-58 RING/U-box superfamily protein (.1) Lus10010179 [exp] 72 / 2e-14 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10030464 [exp] 71 / 3e-14 AT1G26800 181 / 3e-57 RING/U-box superfamily protein (.1) Lus10036757 [exp] 69 / 6e-14 AT1G26800 127 / 1e-36 RING/U-box superfamily protein (.1) Lus10037170 [exp] 68 / 2e-13 AT1G26800 128 / 5e-37 RING/U-box superfamily protein (.1) Lus10023235 [exp] 66 / 4e-12 AT5G08139 194 / 7e-58 RING/U-box superfamily protein (.1) Lus10022967 [exp] 65 / 5e-12 AT1G60360 153 / 3e-45 RING/U-box superfamily protein (.1) Lus10008874 [exp] 66 / 6e-12 AT5G08139 198 / 3e-59 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G083001 [exp] 209 / 8e-68 AT1G18760 81 / 1e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.007G107000 [exp] 101 / 1e-25 AT1G18760 79 / 7e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.007G118000 [exp] 93 / 1e-22 AT1G18760 81 / 1e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.005G062400 [exp] 88 / 1e-20 AT1G60360 82 / 3e-18 RING/U-box superfamily protein (.1) Potri.006G219000 [exp] 82 / 6e-18 AT5G08139 75 / 7e-15 RING/U-box superfamily protein (.1) Potri.001G103900 [exp] 75 / 5e-16 AT4G26400 85 / 2e-19 RING/U-box superfamily protein (.1.2) Potri.005G090500 [exp] 74 / 5e-15 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1) Potri.007G074014 [exp] 72 / 1e-14 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) Potri.001G185200 [exp] 71 / 2e-14 AT3G02340 66 / 2e-12 RING/U-box superfamily protein (.1) Potri.010G168300 [exp] 71 / 2e-14 AT1G26800 195 / 4e-63 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10025671 pacid=23145070 polypeptide=Lus10025671 locus=Lus10025671.g ID=Lus10025671.BGIv1.0 annot-version=v1.0 ATGGCGACTACCACCTCCTCTGCCTACGAGTACACCATGTACCAAGCTTCGGAATCCACCACGATCCCCGTCGATTACTTCTCTTCCACCGCCGACGTCG CAGCATTCAACTTCGACCTCCACTTCCGCCACGTCCTCCAGCTCCGCTACCCTGAACCGGTCCATATCCAGCTCGACTCAACTTCCCGCTCCTATCTCCT ACCGCGGCGCATGTTTTCGTCGCCGCCCGAGGGATTCGATCCTTCGACCGTCGTGGAGGCGGCGCTCTCCGAGACGGGAGCCGCCGCCGACTTCATCGCC TCCATCGTCCCGGCAGCTTCCTCGTTCGCGGCCGAGGGATTCGATCCTTCGACCGTCGTGGAGGCGGCGCTCTCCGAGACGGGAGCCGCCGCCGACTTCA TCGCCTCTATCGTCCCGGAAGTTTCCTCGTTCGCGGTCGAGCTGGCGACGGATCCTTGCAATGACGGCGTTAGTGTGGTGACCTTGGTGTTGGCTTTGTT CGTGATCACTCCGTTTGACGATCGGGAGGCGATTGATCGAGCTTTGAACGAGCAGGATTTTAGGGATTTGAGGTTTAAGCCTGCGAGTAAGTCGTCCATT GAAGGACTGAAGAGGTTTACACTCGATTGCTTGGGTCCTTCCTCCGTCAGGAAGTGTACAGTGTGTTTGGATGAGATGTTGATCGGCGATCAGGTTGCTT GTTTGCCATGTGAGCATCTCTTCCATGGGAGCTGCATCGTTCAGTGGCTGGAGACGAGCCATTTGTGTCCATTGTGCAGGTACGCCATGCCTTAG
AA sequence Show only first row Show all	>Lus10025671 pacid=23145070 polypeptide=Lus10025671 locus=Lus10025671.g ID=Lus10025671.BGIv1.0 annot-version=v1.0 MATTTSSAYEYTMYQASESTTIPVDYFSSTADVAAFNFDLHFRHVLQLRYPEPVHIQLDSTSRSYLLPRRMFSSPPEGFDPSTVVEAALSETGAAADFIA SIVPAASSFAAEGFDPSTVVEAALSETGAAADFIASIVPEVSSFAVELATDPCNDGVSVVTLVLALFVITPFDDREAIDRALNEQDFRDLRFKPASKSSI EGLKRFTLDCLGPSSVRKCTVCLDEMLIGDQVACLPCEHLFHGSCIVQWLETSHLCPLCRYAMP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13228			RING/U-box superfamily protein...		Lus10025671 [exp]	0	1
AT3G27220			Galactose oxidase/kelch repeat...		Lus10014602 [exp]	3.0	0.8415
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013333 [exp]	20.5	0.7489
AT1G07590			Tetratricopeptide repeat (TPR)...		Lus10029724 [exp]	22.3	0.7722
AT2G23570		ATMES19	ARABIDOPSIS THALIANA METHYL ES...		Lus10000841 [exp]	29.7	0.7162
AT2G27410	B3		Domain of unknown function (DU...		Lus10035394 [exp]	31.7	0.7376
					Lus10003030 [exp]	45.9	0.7003
AT3G29970			B12D protein (.1)		Lus10035132 [exp]	49.3	0.7369
AT3G59850			Pectin lyase-like superfamily ...		Lus10002125 [exp]	65.0	0.7240
AT5G61000		ATRPA70D	Replication factor-A protein 1...		Lus10003025 [exp]	92.8	0.6773
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10000381 [exp]	99.5	0.6612

Compare expression of checked genes

Lus10025671 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.