Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21790 404 / 3e-143 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018165 [exp] 0 / 1 AT1G21790 248 / 5e-102 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G178200 [exp] 423 / 6e-151 AT1G21790 392 / 9e-139 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1) Potri.002G083300 [exp] 423 / 1e-150 AT1G21790 425 / 3e-151 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03798 [flax] [poplar] TRAM_LAG1_CLN8 TLC domain
Representative CDS sequence Show only first row Show all	>Lus10025673 pacid=23145039 polypeptide=Lus10025673 locus=Lus10025673.g ID=Lus10025673.BGIv1.0 annot-version=v1.0 ATGGTGAGATCAACGGCGAGCCAGAACGAAAACGACAACAAGGTGGGAGCTTTCTTCTTAGCCACTCTGCTTCTGTGGTCAGTATCAATTGGGTTCGAAA TCCTCTTCAACAAGCGAGCCCAGCTCATCTTCATCGTCGCCGGCGGGATATTCTTCCAGTTAGCCAACTGGGTAATTCGATCCTTGGTCTCTCGTGACCC GCTCTTCGTCAACACTTGCGTCTCCCTCCTCCATTCCTCCGTCACTTCCTCCGCAGTGCTTCTGATTTTGGCCAATCGGATTTCACATGACGGTGCAAAT GGGATATTCGAGCACTCCGAACTCGTTGGAAGTGCATGGCAGTGGGCGTACCCTGCCTTATGTTTCTCATCCGGTTACTTTGCATATGATCAGTTGGATA TGCTCCTTTACCGGCTTTATAGTGGCGTCTTTCCTTCCATCCTAGTGCACCATCTGGTCCTTCTCATGTGCTTCACTCTTGCCCTATATCGGAACGTCAC GATTAACTATCTCATTCTCACCCTAATCTGCGAGCTGCATTCAATCTTCCTACACGTGAGGAAACTGAGACGGATGGCCGGGATTCGTGATGCAAGGAGC AAGATCGTGAAGGTGGAATGGATCCTGAACTGGCTGACATTCACATTCGCAAGAGTGGTGCCTCACGTCCTGATAACCACGAAGCTGATTAAAGATGCAC CCAAGTTCGGAAAGGGGATCGAGTTGCCACTTGCGCTGTTTGGCATGGTTGGAATGAACATACTGAATGCTGGTCTGGGGATGGATCTGTTCAAAGCTTT TCGGCGAGAACGAAACCTGCTGACGAGTAGTCATCGCAACCACCACGAATGA
AA sequence Show only first row Show all	>Lus10025673 pacid=23145039 polypeptide=Lus10025673 locus=Lus10025673.g ID=Lus10025673.BGIv1.0 annot-version=v1.0 MVRSTASQNENDNKVGAFFLATLLLWSVSIGFEILFNKRAQLIFIVAGGIFFQLANWVIRSLVSRDPLFVNTCVSLLHSSVTSSAVLLILANRISHDGAN GIFEHSELVGSAWQWAYPALCFSSGYFAYDQLDMLLYRLYSGVFPSILVHHLVLLMCFTLALYRNVTINYLILTLICELHSIFLHVRKLRRMAGIRDARS KIVKVEWILNWLTFTFARVVPHVLITTKLIKDAPKFGKGIELPLALFGMVGMNILNAGLGMDLFKAFRRERNLLTSSHRNHHE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21790			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10025673 [exp]	0	1
AT5G15210	ZF_HD	ATHB30, ZFHD3, ...	ZINC FINGER HOMEODOMAIN 8, ZIN...		Lus10030679 [exp]	2.0	0.8747
AT5G37980			Zinc-binding dehydrogenase fam...		Lus10004380 [exp]	3.6	0.8857
AT5G17780			alpha/beta-Hydrolases superfam...		Lus10013629 [exp]	5.7	0.8683
AT5G51150			Mitochondrial import inner mem...		Lus10032508 [exp]	6.7	0.8524
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Lus10026909 [exp]	7.4	0.8654
AT4G00110		GAE3	UDP-D-glucuronate 4-epimerase ...		Lus10015876 [exp]	8.0	0.8518
AT5G17560			BolA-like family protein (.1)		Lus10020347 [exp]	8.1	0.8558
AT5G37980			Zinc-binding dehydrogenase fam...		Lus10040177 [exp]	13.2	0.8628
AT2G21860			violaxanthin de-epoxidase-rela...		Lus10032756 [exp]	13.7	0.8585
AT3G47860		CHL	chloroplastic lipocalin (.1)		Lus10035734 [exp]	15.6	0.8399

Compare expression of checked genes

Lus10025673 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.