Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21810 308 / 1e-95 Plant protein of unknown function (DUF869) (.1) AT3G05270 290 / 1e-88 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G77580 271 / 2e-81 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G19835 152 / 3e-38 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G47900 150 / 1e-37 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT4G36120 141 / 1e-34 Plant protein of unknown function (DUF869) (.1) AT2G23360 99 / 2e-21 Plant protein of unknown function (DUF869) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018164 [exp] 1038 / 0 AT1G77580 395 / 6e-129 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10000186 [exp] 969 / 0 AT1G77580 333 / 4e-106 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10029679 [exp] 444 / 4e-146 AT1G77580 372 / 1e-119 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10042719 [exp] 436 / 4e-143 AT1G77580 386 / 5e-125 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10012712 [exp] 186 / 2e-51 AT1G77580 233 / 1e-69 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10010888 [exp] 186 / 5e-51 AT1G77580 233 / 2e-69 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10034509 [exp] 152 / 2e-39 AT1G19835 582 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10033160 [exp] 153 / 3e-38 AT1G19835 949 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10012431 [exp] 151 / 8e-38 AT1G19835 901 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G083400 [exp] 576 / 0 AT3G05270 334 / 2e-105 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G178100 [exp] 537 / 0 AT3G05270 356 / 1e-114 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G070400 [exp] 366 / 4e-117 AT3G05270 308 / 6e-96 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.007G098500 [exp] 358 / 3e-114 AT3G05270 310 / 7e-97 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.002G024400 [exp] 148 / 1e-36 AT1G19835 941 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G237100 [exp] 147 / 2e-36 AT1G19835 869 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G140300 [exp] 123 / 1e-28 AT2G23360 551 / 0.0 Plant protein of unknown function (DUF869) (.1) Potri.007G046100 [exp] 107 / 1e-23 AT2G23360 549 / 3e-180 Plant protein of unknown function (DUF869) (.1) Potri.009G099500 [exp] 102 / 3e-22 AT2G23360 295 / 2e-86 Plant protein of unknown function (DUF869) (.1) Potri.001G304200 [exp] 99 / 3e-21 AT2G23360 279 / 2e-80 Plant protein of unknown function (DUF869) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05911 [flax] [poplar] FPP Filament-like plant protein, long coiled-coil
Representative CDS sequence Show only first row Show all	>Lus10025674 pacid=23144990 polypeptide=Lus10025674 locus=Lus10025674.g ID=Lus10025674.BGIv1.0 annot-version=v1.0 ATGGAGAAACTGAGAGTTCTGGTTCAATTTCCTCACATTCTGAGAGATGCTCTGATGATCAGGTGGGTTGGGAAGTTGCAAGAATCAATCTTTTTTGAAG CAATGAAAGCATCTCCCAATGATGAAAGTCAATCTCCTGAAGTTACCTCAAAAACTTCAGCTGTGGATGAAGAAGTCAACGAAACCATCAAATGCTTGAC AGAGAAGTTATCAGCTGCACTCGTGAACATCAGCCAGAAAGACGATTTAGTGAAGCAACACTCCAAAGTTGCTGAAGAAGCTGTTGCAGGATGGGAGAAG GCTGAAAATGACTTGGTAGTTATCAAGGTACAGCTCGAAGCAGCAACACATAAGAAATCTCAACTCGAAGATCGCGTAAGCCATCTTGACGGAGCCTTGA AAGAATGCGTTAGGCAGCTCAGACAAGCACGGGATGAGCAGGAAGGGAAGATACACGAGGCAGTTGCGAGTAAAAGTATAGAATGGGAAGCCATTAAATC CGAACTAGAGAAACAGATTCTTCATCTCAAGACAGAAGCAGAATCTACAAAAAAACCCGAGTCCCCTACTCTTCGAGTCGATCCTGATTTGTATGACAAG CTTGAATATCTAGAACAGGAGAATGAATCGCTGAGGCACGAGCTTCTGTCTCAATCTGAAGAACTAGAGGTCAGAGCAATCGAAAGGGACTTGAGTACTC AAGCGGCTGAATCGGCCAGCAGGCAGCATTTGGAGAGCATAAAGAAGTTGGCCAAGCTCGAAGCTGAGTGCCGAAAGCTAAAGACTGTAGCTTTTCGATC ATCGTCTCCACGTTATGATCATAAAACATCTGCTGCTTCCTCGGTTTATCTCGAGTCTCTTACGACGGATAGCCATTCAGATAGTGGGGATCAAAGGCTC AATGCATTGGATTTGGATACACGAAAAGCGAATAACTTGGACACGTCAGCACTGATTGCTGAACTTGATCAGTTCAAGAATGGGAAAGATTCCAACAGGA ATCTACCTGCATCAGCTGTTGAGATTGATCTCATGGACGATTTCCTCGAAATGGAAAGACTTGCTTCAATGGCTGAGACTGAAAGTCGAAGCAATCATGT TGAGTCAGAAGTGGTTGTGAAGCAATCTACTGATGGTGCAGAAAGTGCATTGGGAGTTGAGCACGAGAACGCTATTCGTCATTCGGCTGAATTGGAAATC AAGCTGAGTGAGCTGCAAGGAGTGAAAGATGAACTAGAACGTAGCTTGGAGAACACGAAAGCTGAGAGAGCTGAAGTGGAATCAAGTCTTGTGAGAATGA TGGAAGAGAAAGAACAAGTAGAAAGAAGTTTACAAGAAATGATGGCAGACAAATCAAAGATGGAAACTTTCCTAACCAGGAGTCAAGATGAGAATAAGGC AACGGAAAGTCTGCTGAGGGAAGTCCAACTCAAGTTGGAGGGAGTTGAAACTGAGCTGTTATCGGCGAGAGAATCGAGGCAAGACGTGGAATCTCAACTC TTTGCCTTGGAAGCAGAATGCCGTACGATGTCAGCACAGGTTTCCACCTTGGAAACCGAACTTGAGAAGGAAAAGGCTACGTCTGCCGAGTTAAGCATCA AGTATCTGTACCTGGAGGAAGAACTTTCGAAGAAGAAAGAGGAGATTGAGAACCAACAATCAATGAAGTTGAACAGAGAACCGAAGATTAAACAGGAGGA CATAGCTCTGGCAGCTGGTAAGCTTGCTGAATGCCAGAAGACAATACTGTCTCTAGGAAAGCAACTCAAATCTCTAGCGACGCTCGAGGACTTCTTGATG GACACGAGCAGCGTACCGGAGATCTCATCCGGAGCTTCTTCATCAGCTGCAGCAAGACTCAGCAATGGTGAGGAACTATGGAGGTTACATTCTAACAAAA CGCACTCTCCTGCATTCGGTTCAAGCTCTTCAAGAGTTGCTGAGTCACCTAGTAAGCACGATCATCAATCCCCGCCATTAGCATCTTCTTCGAATTCTTC GTCAGTTGTGGTGTCCTCGTTGCATACCAGTTCGGATAAGAACCGAAACGGGTTTGCTAAGTTCTTCTCGAGGAGCAAGAATGGGATTCAGCTTGAGCTT TAG
AA sequence Show only first row Show all	>Lus10025674 pacid=23144990 polypeptide=Lus10025674 locus=Lus10025674.g ID=Lus10025674.BGIv1.0 annot-version=v1.0 MEKLRVLVQFPHILRDALMIRWVGKLQESIFFEAMKASPNDESQSPEVTSKTSAVDEEVNETIKCLTEKLSAALVNISQKDDLVKQHSKVAEEAVAGWEK AENDLVVIKVQLEAATHKKSQLEDRVSHLDGALKECVRQLRQARDEQEGKIHEAVASKSIEWEAIKSELEKQILHLKTEAESTKKPESPTLRVDPDLYDK LEYLEQENESLRHELLSQSEELEVRAIERDLSTQAAESASRQHLESIKKLAKLEAECRKLKTVAFRSSSPRYDHKTSAASSVYLESLTTDSHSDSGDQRL NALDLDTRKANNLDTSALIAELDQFKNGKDSNRNLPASAVEIDLMDDFLEMERLASMAETESRSNHVESEVVVKQSTDGAESALGVEHENAIRHSAELEI KLSELQGVKDELERSLENTKAERAEVESSLVRMMEEKEQVERSLQEMMADKSKMETFLTRSQDENKATESLLREVQLKLEGVETELLSARESRQDVESQL FALEAECRTMSAQVSTLETELEKEKATSAELSIKYLYLEEELSKKKEEIENQQSMKLNREPKIKQEDIALAAGKLAECQKTILSLGKQLKSLATLEDFLM DTSSVPEISSGASSSAAARLSNGEELWRLHSNKTHSPAFGSSSSRVAESPSKHDHQSPPLASSSNSSSVVVSSLHTSSDKNRNGFAKFFSRSKNGIQLEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77580			Plant protein of unknown funct...		Lus10025674 [exp]	0	1
AT1G77580			Plant protein of unknown funct...		Lus10018164 [exp]	1.4	0.8331
AT1G77580			Plant protein of unknown funct...		Lus10000186 [exp]	1.7	0.8467
AT4G23820			Pectin lyase-like superfamily ...		Lus10001899 [exp]	12.3	0.7524
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10031842 [exp]	12.4	0.6901
AT4G39050			Kinesin motor family protein (...		Lus10028790 [exp]	14.1	0.7536
AT5G14450			GDSL-like Lipase/Acylhydrolase...		Lus10014592 [exp]	15.7	0.7505
AT1G70300		KUP6	K+ uptake permease 6, K+ uptak...		Lus10012992 [exp]	19.1	0.6996
AT5G62550			unknown protein		Lus10024245 [exp]	19.7	0.7424
AT1G49740			PLC-like phosphodiesterases su...		Lus10019843 [exp]	20.9	0.6366
AT1G72880			Survival protein SurE-like pho...		Lus10015610 [exp]	23.0	0.7127

Compare expression of checked genes

Lus10025674 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.