Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44575 253 / 2e-84 CP22, PSBS, NPQ4 PHOTOSYSTEM II SUBUNIT S, NONPHOTOCHEMICAL QUENCHING 4, Chlorophyll A-B binding family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018163 [exp] 359 / 4e-126 AT1G44575 328 / 7e-114 PHOTOSYSTEM II SUBUNIT S, NONPHOTOCHEMICAL QUENCHING 4, Chlorophyll A-B binding family protein (.1.2) Lus10042720 [exp] 275 / 7e-93 AT1G44575 318 / 1e-109 PHOTOSYSTEM II SUBUNIT S, NONPHOTOCHEMICAL QUENCHING 4, Chlorophyll A-B binding family protein (.1.2) Lus10029680 [exp] 274 / 2e-92 AT1G44575 315 / 6e-109 PHOTOSYSTEM II SUBUNIT S, NONPHOTOCHEMICAL QUENCHING 4, Chlorophyll A-B binding family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G083500 [exp] 277 / 1e-93 AT1G44575 288 / 4e-98 PHOTOSYSTEM II SUBUNIT S, NONPHOTOCHEMICAL QUENCHING 4, Chlorophyll A-B binding family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00504 [flax] [poplar] Chloroa_b-bind Chlorophyll A-B binding protein
Representative CDS sequence Show only first row Show all	>Lus10025676 pacid=23145032 polypeptide=Lus10025676 locus=Lus10025676.g ID=Lus10025676.BGIv1.0 annot-version=v1.0 ATGGCGCAAACAATGGTGCTCTCTTCAGGGGTCGTTTCAACAAGACAGCCATCGTTCACCAATCTCAAGAGAAACCCCCAACTCATAAAACCCACATCTC GCATTCTCCACTTCAACCCACTTCCTTCTTCTTCTTTGTCGTCGTCTCGGTCGGCGTCTTTCTCAGTCGTTGCTCTGTTCAAGTCCAAAACCAAGGCTGC TCCCAAAAAGGCTCCGGCGCCGCCGCCGAAAGTTGAGGATGGTATCTTTGGGACGTCGGGAGGGATTGGTTTCACTAAGCAGAATGAGCTCTTCGTTGGC AGAGTCGCCATGATTGGCTTTGCCGCATCTTTGTTGGGAGAAGCTGTAACAGGAAAAGGAATTCTGTCACAATTGAACCTGGAAACTGGAATCCCGATCT ATGAAGCAGAACCACTCCTCCTTTTCTTCATCCTCTTCACCCTACTTGGAGCCATCGGAGCCTTAGGAGACAGAGGAAGATTTGTCGATGAAGAGCCCAC CGGCCTCGACAAAGCTGTCATCGCCCCCGGCAAGGGCTTCCGGGCCGCTTTAGGGCTCCCTGATGGAGGGCCGTTGTTTGGATTCACGAAGGCGAACGAG CTGTTCGTGGGGAGACTTGCGCAGCTAGGGATCGCGTTCTCTTTGATCGGAGAAGTGATAACCGGGAAAGGAGCGTTGGCGCAACTGAACATCGAGACAG GGATCCCGATCAACGAGATCGAGCCGTTGGTGTTGTTCAACGTCCTGTTCTTCTTCATTGCTGCGTTGAATCCCGGCACCGGAAAGTTCGTCACTGATGA TGAGGAAAAGTAA
AA sequence Show only first row Show all	>Lus10025676 pacid=23145032 polypeptide=Lus10025676 locus=Lus10025676.g ID=Lus10025676.BGIv1.0 annot-version=v1.0 MAQTMVLSSGVVSTRQPSFTNLKRNPQLIKPTSRILHFNPLPSSSLSSSRSASFSVVALFKSKTKAAPKKAPAPPPKVEDGIFGTSGGIGFTKQNELFVG RVAMIGFAASLLGEAVTGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDEEPTGLDKAVIAPGKGFRAALGLPDGGPLFGFTKANE LFVGRLAQLGIAFSLIGEVITGKGALAQLNIETGIPINEIEPLVLFNVLFFFIAALNPGTGKFVTDDEEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Lus10025676 [exp]	0	1
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10039740 [exp]	1.7	0.9475
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Lus10042720 [exp]	1.7	0.9563
AT2G46735			unknown protein		Lus10002690 [exp]	3.2	0.9438
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Lus10029680 [exp]	4.0	0.9488
AT4G02920			unknown protein		Lus10042685 [exp]	4.5	0.9303
AT5G07020			proline-rich family protein (....		Lus10024125 [exp]	6.3	0.9475
AT5G01920		STN8	State transition 8, Protein ki...		Lus10022730 [exp]	6.9	0.9398
AT3G15090			GroES-like zinc-binding alcoho...		Lus10003495 [exp]	9.9	0.8939
AT4G02920			unknown protein		Lus10029640 [exp]	11.6	0.9307
AT5G07020			proline-rich family protein (....		Lus10005388 [exp]	13.0	0.9332

Compare expression of checked genes

Lus10025676 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.