Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39490 342 / 5e-112 CYP96A10 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) AT2G23180 340 / 1e-111 CYP96A1 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) AT4G39480 332 / 2e-108 CYP96A9 "cytochrome P450, family 96, subfamily A, polypeptide 9", cytochrome P450, family 96, subfamily A, polypeptide 9 (.1) AT2G21910 324 / 2e-105 CYP96A5 "cytochrome P450, family 96, subfamily A, polypeptide 5", cytochrome P450, family 96, subfamily A, polypeptide 5 (.1) AT1G47620 317 / 2e-102 CYP96A8 "cytochrome P450, family 96, subfamily A, polypeptide 8", cytochrome P450, family 96, subfamily A, polypeptide 8 (.1) AT4G32170 311 / 3e-100 CYP96A2 "cytochrome P450, family 96, subfamily A, polypeptide 2", cytochrome P450, family 96, subfamily A, polypeptide 2 (.1) AT1G57750 297 / 3e-95 MAH1, CYP96A15 MID-CHAIN ALKANE HYDROXYLASE 1, "cytochrome P450, family 96, subfamily A, polypeptide 15", cytochrome P450, family 96, subfamily A, polypeptide 15 (.1.2) AT4G39500 294 / 3e-94 CYP96A11 "cytochrome P450, family 96, subfamily A, polypeptide 11", cytochrome P450, family 96, subfamily A, polypeptide 11 (.1) AT5G52320 291 / 1e-92 CYP96A4 "cytochrome P450, family 96, subfamily A, polypeptide 4", cytochrome P450, family 96, subfamily A, polypeptide 4 (.1) AT5G23190 288 / 6e-91 CYP86B1 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028047 [exp] 561 / 0 AT2G21910 375 / 1e-125 "cytochrome P450, family 96, subfamily A, polypeptide 5", cytochrome P450, family 96, subfamily A, polypeptide 5 (.1) Lus10025678 [exp] 557 / 0 AT4G39490 363 / 9e-121 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10015306 [exp] 556 / 0 AT4G39490 342 / 3e-108 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10022279 [exp] 422 / 2e-143 AT2G23180 449 / 4e-154 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10022277 [exp] 419 / 2e-142 AT4G39490 395 / 1e-132 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10002527 [exp] 416 / 6e-141 AT2G23180 454 / 7e-156 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10003669 [exp] 396 / 4e-133 AT2G23180 440 / 4e-150 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10002525 [exp] 392 / 1e-131 AT4G39490 410 / 2e-138 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10015307 [exp] 352 / 2e-120 AT2G23180 219 / 6e-69 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G397900 [exp] 410 / 1e-138 AT4G39490 480 / 6e-166 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.005G064400 [exp] 385 / 4e-129 AT4G39490 477 / 8e-165 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.015G086900 [exp] 382 / 4e-128 AT2G23180 455 / 2e-156 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Potri.007G080300 [exp] 371 / 1e-123 AT4G39490 574 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.015G132800 [exp] 354 / 6e-117 AT4G39490 589 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.015G087000 [exp] 330 / 8e-109 AT2G23180 373 / 2e-125 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Potri.008G125300 [exp] 283 / 1e-89 AT4G39490 410 / 4e-139 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.008G183300 [exp] 280 / 5e-88 AT1G24540 682 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) Potri.014G085800 [exp] 278 / 4e-87 AT2G45970 866 / 0.0 LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1) Potri.010G050100 [exp] 277 / 5e-87 AT1G24540 684 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10025677 pacid=23144978 polypeptide=Lus10025677 locus=Lus10025677.g ID=Lus10025677.BGIv1.0 annot-version=v1.0 ATGGCGACAGTACTACTACTACCACTTCTCCTCCTCCCATTTCTCATCTCAGTCCTTCTGGTTTACTACATCGCCGGCGGCAGAGTCAAGAGGCTAATCT ACATCCTCCGCCGCACCTCGCGAATCCACGACATCATCACCCGTGGCCTCAAGAGTTCGGGTGGCACGTTGAGGTACAATAGTTACCTGCTCGTCACCAG CGATCCGAGGAACGTTCACCATGTGTTCAGCAAGCGCCACTCGATTTTTTTGAAGGGTCCAGAGTCGAAGGAGATGCTCGAAGCGTTGGGAGAAGGTATA TTCAACTCCGATGGCGAATTCGCCCTCTCCCAGCGTCGCATCCTTCATTCGCTCCTCGGTTCTCCAGAATTCGAGGACGTTCTTATGACTACCCTCCGTA AGAAGATCGAATCTGGCCTGTTTCCTGTCCTGAACAGGGCTGCCTCCTCGTCGAGGGCGGAGCTCGACCTTCAGGATGTGTTCAAGAGGTTCATGTTCGA CAACATTTGTACCACGGTGCTCGGATTCGACCCGAATTACCTAACGGTGGACCTAGTTCCCGACCTTCCGTACGCCAGGGCGTACGACGACATGGAGCAG GCTGCGTTCTACCGCCACATCCTTCCGGCATTCTGTTGGAAGTTCCAGAGATGGATAGGGATCGGAGAGGAGAGAAAGCTTCGTAAAGCGTGGAAAAAGT TTGATCAATTCCTTTACGAAAGGATCGAAATCAAGCGAGACGGCTTCATCAGTAAGGTAAAATGTCAGCAATTTGACTTGATAACGGCTTTCATGGCAGC GGAGGAGAACGACGAGTCAGGCGAAATCGGACAGTTTGGAAAGTCGGACGACGACGAATCAGGCGAAATCGGACAGTTTGGAAAGTCGGACAAGTTATTA AGAGACACAGCGTTCAACCTAATTGCGGCCGGTAGGGACACAGTTACCGTCACTCTGGTTTGGCTACTCTGGCTGGTCGCTTCAAACCCTAAAGTGGAGA AGAAAATCCTGGAAGAAATGAAAACGAATCTTGGAGAAACTTCCGGCAATTGGAGGTTTCTCAGCGAGGAGGAGTTGAACAAGCTAGTGTACCTACACGG TGCGGTTTGCGAGGCGCTCCGGGTGGAACCCGCCAGTGAGCATCCTGTACAAGAGGAGGAGATGTTACCTACCGGGCATGTGGTTAGGAAGAACAGGATG GTTCTCTTTTCAATATATTCGATGGGGAGGATGGAGGAGATTTGGGGGGAGGATTGGATGGAGTTCAAGCCGGAGCGATGGATCAATTCCGAAGGGAACA AGATTGTTCACGTCCCGTCGTACAAGTTCATGACGTTTGCTGCCGGGCCGAGATCTTGCTTGGGGAAGAAGATTGCTTTCTTGTATGCCAAGCAAGCGGC GAGTGCTTTGCTTTATAACTATAAGGTGGAGTTGGTCGAAGGACATCCAGTCGCGCCTGCGGTTTCCATTGTGATGTTTATGAAGGACGGTTTGAAAGTT AGAATGTCGAAAAGAGAGGTGATTTAA
AA sequence Show only first row Show all	>Lus10025677 pacid=23144978 polypeptide=Lus10025677 locus=Lus10025677.g ID=Lus10025677.BGIv1.0 annot-version=v1.0 MATVLLLPLLLLPFLISVLLVYYIAGGRVKRLIYILRRTSRIHDIITRGLKSSGGTLRYNSYLLVTSDPRNVHHVFSKRHSIFLKGPESKEMLEALGEGI FNSDGEFALSQRRILHSLLGSPEFEDVLMTTLRKKIESGLFPVLNRAASSSRAELDLQDVFKRFMFDNICTTVLGFDPNYLTVDLVPDLPYARAYDDMEQ AAFYRHILPAFCWKFQRWIGIGEERKLRKAWKKFDQFLYERIEIKRDGFISKVKCQQFDLITAFMAAEENDESGEIGQFGKSDDDESGEIGQFGKSDKLL RDTAFNLIAAGRDTVTVTLVWLLWLVASNPKVEKKILEEMKTNLGETSGNWRFLSEEELNKLVYLHGAVCEALRVEPASEHPVQEEEMLPTGHVVRKNRM VLFSIYSMGRMEEIWGEDWMEFKPERWINSEGNKIVHVPSYKFMTFAAGPRSCLGKKIAFLYAKQAASALLYNYKVELVEGHPVAPAVSIVMFMKDGLKV RMSKREVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Lus10025677 [exp]	0	1
AT5G67090			Subtilisin-like serine endopep...		Lus10009748 [exp]	1.0	0.9526
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10018162 [exp]	1.4	0.9514
AT1G47480			alpha/beta-Hydrolases superfam...		Lus10019884 [exp]	3.5	0.9324
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Lus10015278 [exp]	4.8	0.8958
AT1G18265			Protein of unknown function, D...		Lus10035638 [exp]	4.9	0.9204
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10026692 [exp]	5.7	0.9035
AT5G11840			Protein of unknown function (D...		Lus10039247 [exp]	5.7	0.9432
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10010012 [exp]	7.1	0.8939
AT1G62510			Bifunctional inhibitor/lipid-t...		Lus10002927 [exp]	8.1	0.8958
AT4G39480		CYP96A9	"cytochrome P450, family 96, s...		Lus10018161 [exp]	11.0	0.9143

Compare expression of checked genes

Lus10025677 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.