Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39490 361 / 9e-120 CYP96A10 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) AT2G23180 350 / 1e-115 CYP96A1 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) AT2G21910 350 / 2e-115 CYP96A5 "cytochrome P450, family 96, subfamily A, polypeptide 5", cytochrome P450, family 96, subfamily A, polypeptide 5 (.1) AT4G39480 345 / 2e-113 CYP96A9 "cytochrome P450, family 96, subfamily A, polypeptide 9", cytochrome P450, family 96, subfamily A, polypeptide 9 (.1) AT1G57750 343 / 3e-113 MAH1, CYP96A15 MID-CHAIN ALKANE HYDROXYLASE 1, "cytochrome P450, family 96, subfamily A, polypeptide 15", cytochrome P450, family 96, subfamily A, polypeptide 15 (.1.2) AT5G23190 338 / 3e-110 CYP86B1 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) AT5G08250 335 / 3e-110 Cytochrome P450 superfamily protein (.1) AT4G32170 335 / 7e-110 CYP96A2 "cytochrome P450, family 96, subfamily A, polypeptide 2", cytochrome P450, family 96, subfamily A, polypeptide 2 (.1) AT5G52320 325 / 7e-106 CYP96A4 "cytochrome P450, family 96, subfamily A, polypeptide 4", cytochrome P450, family 96, subfamily A, polypeptide 4 (.1) AT1G47620 325 / 1e-105 CYP96A8 "cytochrome P450, family 96, subfamily A, polypeptide 8", cytochrome P450, family 96, subfamily A, polypeptide 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015306 [exp] 842 / 0 AT4G39490 342 / 3e-108 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10028047 [exp] 773 / 0 AT2G21910 375 / 1e-125 "cytochrome P450, family 96, subfamily A, polypeptide 5", cytochrome P450, family 96, subfamily A, polypeptide 5 (.1) Lus10025677 [exp] 583 / 0 AT2G23180 361 / 1e-119 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10022279 [exp] 432 / 1e-147 AT2G23180 449 / 4e-154 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10002527 [exp] 431 / 4e-147 AT2G23180 454 / 7e-156 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10022277 [exp] 420 / 8e-143 AT4G39490 395 / 1e-132 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10003669 [exp] 407 / 8e-138 AT2G23180 440 / 4e-150 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10002525 [exp] 396 / 3e-133 AT4G39490 410 / 2e-138 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10003756 [exp] 369 / 9e-127 AT2G23180 219 / 1e-68 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G397900 [exp] 428 / 8e-146 AT4G39490 480 / 6e-166 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.015G086900 [exp] 396 / 1e-133 AT2G23180 455 / 2e-156 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Potri.005G064400 [exp] 394 / 2e-132 AT4G39490 477 / 8e-165 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.007G080300 [exp] 388 / 3e-130 AT4G39490 574 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.015G132800 [exp] 363 / 1e-120 AT4G39490 589 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.015G087000 [exp] 343 / 2e-114 AT2G23180 373 / 2e-125 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Potri.007G072100 [exp] 336 / 2e-109 AT5G23190 799 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.005G092200 [exp] 332 / 1e-107 AT5G23190 788 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.003G129100 [exp] 317 / 3e-102 AT1G63710 823 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) Potri.014G085800 [exp] 317 / 4e-102 AT2G45970 866 / 0.0 LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10025678 pacid=23145096 polypeptide=Lus10025678 locus=Lus10025678.g ID=Lus10025678.BGIv1.0 annot-version=v1.0 ATGGCGGCAATAGCACTAGCAGTTCTCATCCTGCTCCTCCCACTCCTGGCAACAACTCTGGCTTACCTCATCGGCCGCGGAAACTACGAAGCCTTTAAGC TTATCTTCGACATCCTCCGCGCCCCATCTCAGCTTCACCGCACCATCACCGGCCGCCTCAAGTCCTCCGGCGGCACAGCACACACCACAGATATAGTCCT CACATGCGATCCAAAAAACCTAGACCATATTTTCAACAAGCGCCACTCCAATTTCCCCAAAGGCCCCGAGTTCAAAGAAAAACTCGACGCCTTGGGGGAA GGCATTTTCGCTGAGGACGGAGAATCCGGCCTCTCCCAGCGCCGGATCCTCCACTCTGTTTTCAACTCTGCCCCATTCGAACAGCTTCTTAGCACTTCCC TCCTCGAAAAGCTTAACTCCGGCTTGTTCCCGGTCTTGGACTCTGCGCGGGAGCTAGACATGCAGGATGTGTACAAGAGGTTCATGTTCGACAGCATTTG CACTACGGTGCTCGGATACGATCCAAAATATCTCACTGTCGAACTACTCCCCGACGTCCTGTACGCCAAGGCGTACGAGGACATCGAGGAGGCAGCGGTT TACCGCTACCTCATGCCGGATTTCTGGTGGAAATTTCAGAGATGGGCCGGAATTGGAGAAGAGAGGAAGTACAGGAAAGCATTGGAGAAATTCGACGAAT TCCTCTATGAGAGGATCAATGTCAAGAGAAGGAGCCTTGACAAAACAGATGAAGGGGGAAATGATCATCAGTTCGACTTTCTGACATTTTTCATGGTGGA AAGTCGAGAACAGGGCGAATTGGGAGGAGAAACCGGTAGAGTGGGGATGTCTGACAAGCTCATGAGAGACATTGCGTTCAACATGATCGCAGCGGGGAGA GACACGGTCTCTATCAATCTATCCTGGCTGCTCTGGCTCATTGTTTCACACCCCAACGTCGAGGCAAAAATCCTCGACGAAATAGGTGTGAATTTTGGTA GAAACTGCAACAATTGGAGCCTCTTCAGCGATGAAGAGCTTAACCACATGGTTTACTTGCATGCCACCGTGTGCGAGGCGCTAAGGCTTTACCCGCCACT CGCATTTGAGCATCGGACGGCTATAGAGGCAGACACACTGCCAAGCGGGCATTTTGTCGGGAAAAATGCGACGATTTTGTTTTCGATGTATTCCATGGCG AGGATGGAAAATGTTTGGGGGCAAGATTGCATGGAGTTTAAACCGGAGAGGTGGATTAGCGAAGAAGGCGATAAGATTGTTCACGTCCCGTCGTACAAAT TCTCAGCGTTTCTGGCTGGACCTAGGGCTTGCTTGGGGAAGAAGATTGCTTTCTGGTATGCCAAGCAAGTGACCAGTGCTTTGATTTATAACTATAAGGT GGAGTTGGTCGAAGGACATCTTGTCGCGCCTGCAATTTCGATCACGTTGTTCATGAAAGACGGATTGAAAGTTCGAATCTCGAGGAGAAGGTAA
AA sequence Show only first row Show all	>Lus10025678 pacid=23145096 polypeptide=Lus10025678 locus=Lus10025678.g ID=Lus10025678.BGIv1.0 annot-version=v1.0 MAAIALAVLILLLPLLATTLAYLIGRGNYEAFKLIFDILRAPSQLHRTITGRLKSSGGTAHTTDIVLTCDPKNLDHIFNKRHSNFPKGPEFKEKLDALGE GIFAEDGESGLSQRRILHSVFNSAPFEQLLSTSLLEKLNSGLFPVLDSARELDMQDVYKRFMFDSICTTVLGYDPKYLTVELLPDVLYAKAYEDIEEAAV YRYLMPDFWWKFQRWAGIGEERKYRKALEKFDEFLYERINVKRRSLDKTDEGGNDHQFDFLTFFMVESREQGELGGETGRVGMSDKLMRDIAFNMIAAGR DTVSINLSWLLWLIVSHPNVEAKILDEIGVNFGRNCNNWSLFSDEELNHMVYLHATVCEALRLYPPLAFEHRTAIEADTLPSGHFVGKNATILFSMYSMA RMENVWGQDCMEFKPERWISEEGDKIVHVPSYKFSAFLAGPRACLGKKIAFWYAKQVTSALIYNYKVELVEGHLVAPAISITLFMKDGLKVRISRRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10025678 [exp]	0	1
AT1G02640		ATBXL2, BXL2	beta-xylosidase 2 (.1)		Lus10010015 [exp]	1.4	0.9678
					Lus10031340 [exp]	2.0	0.9292
AT1G56430		ATNAS4	ARABIDOPSIS THALIANA NICOTIANA...		Lus10031416 [exp]	2.0	0.9361
AT1G43650			nodulin MtN21 /EamA-like trans...		Lus10028585 [exp]	7.3	0.9064
AT5G51490			Plant invertase/pectin methyle...		Lus10031720 [exp]	11.2	0.9180
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Lus10004831 [exp]	11.5	0.9000
AT1G52150	HD	ATHB15, ICU4, C...	INCURVATA 4, CORONA, Homeobox-...		Lus10002037 [exp]	12.7	0.9223
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Lus10019707 [exp]	12.7	0.9102
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Lus10018160 [exp]	14.8	0.9267
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10034670 [exp]	16.7	0.9297

Compare expression of checked genes

Lus10025678 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.