Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21750 481 / 2e-168 ATPDI5, ATPDIL1-1 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) AT1G77510 476 / 3e-166 ATPDI6, ATPDIL1-2 PROTEIN DISULFIDE ISOMERASE 6, PDI-like 1-2 (.1) AT3G54960 121 / 7e-30 ATPDI1, ATPDIL1-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) AT5G60640 111 / 3e-26 ATPDI2, ATPDIL1-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) AT2G47470 88 / 1e-19 ATPDI11, ATPDIL2-1, UNE5, MEE30 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) AT3G16110 84 / 3e-17 ATPDI4, ATPDIL1-6 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1) AT1G52260 80 / 4e-16 ATPDI3, ATPDIL1-5 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 3, PDI-like 1-5 (.1) AT2G32920 74 / 5e-14 ATPDI9, ATPDIL2-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 9, PDI-like 2-3 (.1) AT1G04980 71 / 4e-13 ATPDI10, ATPDIL2-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) AT3G62510 59 / 6e-11 protein disulfide isomerase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018156 [exp] 682 / 0 AT1G21750 710 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10042721 [exp] 563 / 0 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10029681 [exp] 553 / 0 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10015305 [exp] 254 / 3e-83 AT1G21750 189 / 1e-57 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10037403 [exp] 124 / 1e-30 AT5G60640 729 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10021478 [exp] 123 / 2e-30 AT5G60640 740 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10022581 [exp] 122 / 3e-30 AT5G60640 741 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10035870 [exp] 96 / 2e-21 AT1G52260 632 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 3, PDI-like 1-5 (.1) Lus10025792 [exp] 93 / 2e-20 AT3G16110 553 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G082100 [exp] 527 / 0 AT1G21750 689 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.005G179000 [exp] 508 / 5e-179 AT1G21750 680 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.009G013600 [exp] 123 / 1e-30 AT5G60640 712 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Potri.001G183500 [exp] 92 / 4e-20 AT3G16110 650 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1) Potri.002G198300 [exp] 87 / 1e-18 AT2G47470 530 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.014G122800 [exp] 87 / 1e-18 AT2G47470 551 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.014G160000 [exp] 71 / 3e-13 AT1G04980 617 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Potri.002G066800 [exp] 64 / 6e-12 AT1G76760 192 / 2e-63 thioredoxin Y1 (.1) Potri.019G082400 [exp] 66 / 1e-11 AT1G35620 549 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) Potri.005G193400 [exp] 62 / 3e-11 AT1G76760 198 / 2e-65 thioredoxin Y1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10025679 pacid=23144994 polypeptide=Lus10025679 locus=Lus10025679.g ID=Lus10025679.BGIv1.0 annot-version=v1.0 ATGGCGTCCAGGTTTCCGATCTTCTTCTTCCTCGCCATCTTCGCTCTGATCGCCTCCGTTTCAGCTGCTGAAGAGGCTGCGTCGAAGGAGTTCGTGCTCA CGCTCGACCACTCCAATTTCACTGACACTGTCAGCAAGCACGATTTCATCGTCGTCGAGTTCTACGCCCCTTGGTGCGGCCACTGTAAGAGTCTAGCTCC AGAGGTTGGGGTGTTCCCGAAGTTTTCCGGTGAGGAGTTTGAGAACTACATGGCTTTGGCAGAGAAGTTGCGCTCTGACTATGAATTTGGTCACACTTCA AGTGCTAAGTTCCTTCCTCGTGGTGAATCTTCAGTGACTGGGCCGTTGGTTAGGCTGTTCAAGCCATTTGATGAGCTCTTTGTTGATTCTAAGGACTTTA GTGCGGATGCTCTGGAGAAGTTCGTTGAGGAGTCCAGCATACCCACCGTCACTGTGTTCAACAGTGACCCAACCAATCACCCATACGTAATCAAATTCTT CAACAGTCCTGATCCCAAGGCTATGTTGTTTGTGAACTTCACCAGCGAGGTCGCTGATTCATTCAAGGCCAAGTACCGGGAAGTCGCTGAACAATACAAG GGACAAGGTATCATCTTTTTGATTGGAGACGTTGATGCCAGTCAAGGCGCTTTCCAGTTCTTTGGACTTAAAGAAGAACAAGTTCCTCTTGTTATTGTAC AAACAAGCGATGGGCAGAAGTTCTTGAAGGCAAACTTGAACGTCGACGATATCGCTCCTTGGCTCAAGGATTACAAGGAAGGCAAAGTTCCAGCATACAA GAAATCCGAACCCATTCCCGAAACTAACAACGAGCCCGTGAAAGTTGTTGTCGCTGATACCCTACAGGATCTATTCTTCAACTCCGGGAAGAACGTTCTC CTCGAGTTCTACGCTCCATGGTGCGGACACTGCAAGAAACTGGCCCCAATTCTCGACGAAGTTGCTGTGTCCTTCGAGAAGGACTCTACCATCCTCATCG GAAAGATCGACGCAACTGCAAACGATGTTCCCACCGACACATTCGACGTGCAAGGATACCCGACCCTGTTCTTCCGCTCGTCTAGCGGGAACTTGGTGCA GTACGACGGGGACAGAACTAAAGAAGACATCATCGAATTCATCGAAAAGAACAAGGATTCCGTCGCACAACCGAAGGCCGAGGAGTCGAAGGATGAACCA GCTAAAGATGAGCTCTAA
AA sequence Show only first row Show all	>Lus10025679 pacid=23144994 polypeptide=Lus10025679 locus=Lus10025679.g ID=Lus10025679.BGIv1.0 annot-version=v1.0 MASRFPIFFFLAIFALIASVSAAEEAASKEFVLTLDHSNFTDTVSKHDFIVVEFYAPWCGHCKSLAPEVGVFPKFSGEEFENYMALAEKLRSDYEFGHTS SAKFLPRGESSVTGPLVRLFKPFDELFVDSKDFSADALEKFVEESSIPTVTVFNSDPTNHPYVIKFFNSPDPKAMLFVNFTSEVADSFKAKYREVAEQYK GQGIIFLIGDVDASQGAFQFFGLKEEQVPLVIVQTSDGQKFLKANLNVDDIAPWLKDYKEGKVPAYKKSEPIPETNNEPVKVVVADTLQDLFFNSGKNVL LEFYAPWCGHCKKLAPILDEVAVSFEKDSTILIGKIDATANDVPTDTFDVQGYPTLFFRSSSGNLVQYDGDRTKEDIIEFIEKNKDSVAQPKAEESKDEP AKDEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21750		ATPDI5, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10025679 [exp]	0	1
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10019544 [exp]	6.0	0.8454
AT4G29410			Ribosomal L28e protein family ...		Lus10012915 [exp]	9.8	0.8669
AT3G18240			Ribosomal protein S24/S35, mit...		Lus10008778 [exp]	22.6	0.7970
AT1G36240			Ribosomal protein L7Ae/L30e/S1...		Lus10019682 [exp]	26.0	0.8322
AT1G09690			Translation protein SH3-like f...		Lus10030882 [exp]	32.0	0.7903
AT3G60660			unknown protein		Lus10010359 [exp]	34.0	0.8055
AT1G48830			Ribosomal protein S7e family p...		Lus10017497 [exp]	35.5	0.7937
AT3G13882			Ribosomal protein L34 (.1.2)		Lus10037626 [exp]	39.5	0.7801
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10020612 [exp]	41.4	0.7888
AT1G78560			Sodium Bile acid symporter fam...		Lus10005565 [exp]	41.7	0.7817

Compare expression of checked genes

Lus10025679 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.