Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77490 582 / 0 TAPX thylakoidal ascorbate peroxidase (.1) AT4G08390 501 / 1e-177 SAPX stromal ascorbate peroxidase (.1.2.3.4) AT4G35000 241 / 5e-77 APX3 ascorbate peroxidase 3 (.1) AT1G07890 218 / 1e-68 ATAPX01, CS1, APX1, MEE6, ATAPX1 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) AT3G09640 216 / 6e-68 APX1B, APX2 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) AT4G35970 206 / 1e-63 APX5 ascorbate peroxidase 5 (.1) AT4G32320 120 / 9e-31 APX6 ascorbate peroxidase 6 (.1) AT2G22420 82 / 6e-17 Peroxidase superfamily protein (.1) AT2G18140 81 / 1e-16 Peroxidase superfamily protein (.1) AT4G17690 79 / 3e-16 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018155 [exp] 771 / 0 AT1G77490 560 / 0.0 thylakoidal ascorbate peroxidase (.1) Lus10014128 [exp] 237 / 2e-75 AT4G35000 441 / 1e-157 ascorbate peroxidase 3 (.1) Lus10019781 [exp] 236 / 2e-74 AT4G35000 433 / 8e-154 ascorbate peroxidase 3 (.1) Lus10019906 [exp] 222 / 4e-70 AT3G09640 424 / 2e-152 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Lus10013537 [exp] 214 / 6e-67 AT1G07890 445 / 1e-160 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) Lus10015970 [exp] 213 / 4e-66 AT1G07890 436 / 3e-156 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) Lus10000180 [exp] 194 / 8e-59 AT4G35000 372 / 3e-130 ascorbate peroxidase 3 (.1) Lus10028432 [exp] 174 / 3e-51 AT4G35000 337 / 6e-117 ascorbate peroxidase 3 (.1) Lus10002916 [exp] 115 / 5e-29 AT4G32320 330 / 4e-113 ascorbate peroxidase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G179200 [exp] 639 / 0 AT1G77490 556 / 0.0 thylakoidal ascorbate peroxidase (.1) Potri.002G081900 [exp] 567 / 0 AT1G77490 514 / 0.0 thylakoidal ascorbate peroxidase (.1) Potri.004G174500 [exp] 246 / 7e-79 AT4G35000 423 / 6e-151 ascorbate peroxidase 3 (.1) Potri.009G134100 [exp] 241 / 5e-77 AT4G35000 454 / 8e-163 ascorbate peroxidase 3 (.1) Potri.005G112200 [exp] 235 / 1e-74 AT4G35000 438 / 1e-156 ascorbate peroxidase 3 (.1) Potri.016G084800 [exp] 222 / 4e-70 AT3G09640 410 / 8e-147 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Potri.009G015400 [exp] 221 / 2e-69 AT1G07890 370 / 4e-131 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) Potri.006G132200 [exp] 218 / 2e-68 AT3G09640 442 / 2e-159 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Potri.006G254500 [exp] 129 / 1e-33 AT4G32320 392 / 5e-137 ascorbate peroxidase 6 (.1) Potri.007G096200 [exp] 82 / 5e-17 AT2G22420 521 / 0.0 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10025680 pacid=23145012 polypeptide=Lus10025680 locus=Lus10025680.g ID=Lus10025680.BGIv1.0 annot-version=v1.0 ATGGCTCACTGTCCATCTCACCTGCAACTATCCAAATCGCCGCAGCATCATTCGCCTCCACCACCATTTCAAATGGCTTCTTCAACTCTCAGCACGGCCG CCGCCGCCACGTCCTCTCGCCTCCTCCTCCCTTCCTCCTCCACCACCGCTCGTGCTCACATCCGCCAACACCTCTCAACTTCTTCCACTCACGGCTTCTC TCCTCTCAAATGCATTCGATCCTCTCCTCTCCCTCCGTTTCGCGCCTTCTCCAACCAGAGGAGGCCGTTGAGCGCGGTCGCTGCTGCGTCCGATCCTGCT CAGTTGAAGAGCGCTAGGGAGGATATCAAGGAGATTCTCAAGTCCAAGTTCTGTCATCCGATTCTGGTTCGATTGGGGTGGCATGATGCCGGGACGTACA ACAAGGACATCGAGGAGTTCCCGATGAGAGGTGGAGCTAACGGAAGTCTTCGATTCGATATTGAGCTCAAGCACGGTGCAAATGCTGGGCTTGTCAATGC ATTGAGTCTGCTTCAACCTATCAAAGAAAAGTATTCTGGTGTTACCTATGCTGATTTGTTCCAGTTAGCTAGTGCTACTGCCATTGAGGAAGCTGGCGGG CCTAAAATCCCAATGAAATATGGAAGGGTAGATGTCTCTGCTCCAGAGGAATGCCCAGAGGAGGGAAGACTTCCTGATGCTGGCCCCCCAAGTCCTGCCG ATCATTTACGAAAGGTGTTTTACCGAATGGGACTAAATGACAAGGAAATAGTTGCATTGTCTGGTGCACACACCTTGGGAAGGTCCAGACCAGATCGTAG TGGTTGGGGAAAGCCAGAGACTAAGTATACGAAAGATGGGCCTGGTGCACCTGGTGGTCAGTCGTGGACAGCAGAATGGCTGAAGTTTGATAATTCTTAC TTCAAGGATATCAAAGCACAAATAGATGAAGACCTACTTGTACTGCCAACTGATGCTGCTATTTTCGAAGATCCTTCATTCAAGGTGTATGCTGAGAAGT ATGCTGAAGATCAGGATGCTTTCTTCAAGGACTATGCTGAAGCACATGCCAAGCTCAGCAACCTAGGATCTAAGTTCGACCCTCCTGAGGGTATCGTATT GGACGGCGTTCAGGGTGAGAAGTTCGTGGCAGCTAATTACTCGTATGGAAAGAGGGAGTTTTCAGACTCCATGAAGCAGAAGATGCGTGCAGAGTATGAA GCAATTGGTGGTAGCCCCAGTAAGGCTCTTTCGTCTAATTACTTCCTGAACATCATTATTGTCATCTCTGTTCTTGCAGTTTTGACATATCTTTTTGGGA ACTAA
AA sequence Show only first row Show all	>Lus10025680 pacid=23145012 polypeptide=Lus10025680 locus=Lus10025680.g ID=Lus10025680.BGIv1.0 annot-version=v1.0 MAHCPSHLQLSKSPQHHSPPPPFQMASSTLSTAAAATSSRLLLPSSSTTARAHIRQHLSTSSTHGFSPLKCIRSSPLPPFRAFSNQRRPLSAVAAASDPA QLKSAREDIKEILKSKFCHPILVRLGWHDAGTYNKDIEEFPMRGGANGSLRFDIELKHGANAGLVNALSLLQPIKEKYSGVTYADLFQLASATAIEEAGG PKIPMKYGRVDVSAPEECPEEGRLPDAGPPSPADHLRKVFYRMGLNDKEIVALSGAHTLGRSRPDRSGWGKPETKYTKDGPGAPGGQSWTAEWLKFDNSY FKDIKAQIDEDLLVLPTDAAIFEDPSFKVYAEKYAEDQDAFFKDYAEAHAKLSNLGSKFDPPEGIVLDGVQGEKFVAANYSYGKREFSDSMKQKMRAEYE AIGGSPSKALSSNYFLNIIIVISVLAVLTYLFGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77490		TAPX	thylakoidal ascorbate peroxida...		Lus10025680 [exp]	0	1
AT3G25250		AtOXI1, OXI1, A...	oxidative signal-inducible1, A...		Lus10038221 [exp]	1.4	0.8640
AT5G47850		CCR4	CRINKLY4 related 4 (.1)		Lus10029170 [exp]	1.7	0.8567
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Lus10018311 [exp]	2.4	0.8609
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Lus10005201 [exp]	3.5	0.8475
AT5G51040			unknown protein		Lus10043024 [exp]	4.0	0.8554
AT2G37730			Protein of unknown function (D...		Lus10024364 [exp]	5.5	0.8001
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10038283 [exp]	6.0	0.8294
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Lus10009183 [exp]	6.7	0.8540
AT2G37410		ATTIM17-2	TRANSLOCASE OF THE INNER MEMBR...		Lus10043029 [exp]	6.9	0.8401
AT2G40940		ERS1	ethylene response sensor 1 (.1...		Lus10013415 [exp]	7.0	0.8442

Compare expression of checked genes

Lus10025680 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.