Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44170 686 / 0 ALDH4, ALDH3H1 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) AT4G34240 589 / 0 ALDH3I1 aldehyde dehydrogenase 3I1 (.1.2) AT4G36250 429 / 9e-147 ALDH3F1 aldehyde dehydrogenase 3F1 (.1) AT3G66658 139 / 2e-35 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2) AT1G74920 122 / 1e-29 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT1G79440 117 / 4e-28 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT1G23800 106 / 3e-24 ALDH2B7 aldehyde dehydrogenase 2B7 (.1) AT3G48170 103 / 2e-23 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT3G48000 92 / 2e-19 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) AT2G24270 86 / 1e-17 ALDH11A3 aldehyde dehydrogenase 11A3 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018153 [exp] 891 / 0 AT1G44170 734 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10029684 [exp] 800 / 0 AT1G44170 742 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10042724 [exp] 627 / 0 AT1G44170 605 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10015688 [exp] 604 / 0 AT4G34240 674 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Lus10037694 [exp] 591 / 0 AT3G02850 659 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10002557 [exp] 426 / 4e-138 AT3G12080 869 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Lus10041806 [exp] 403 / 2e-136 AT4G36250 640 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10031849 [exp] 396 / 9e-134 AT4G36250 550 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10031280 [exp] 393 / 1e-132 AT4G36250 555 / 0.0 aldehyde dehydrogenase 3F1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G179300 [exp] 726 / 0 AT1G44170 736 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Potri.002G081800 [exp] 714 / 0 AT1G44170 731 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Potri.005G069800 [exp] 627 / 0 AT4G34240 626 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Potri.001G412900 [exp] 618 / 0 AT4G34240 678 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Potri.001G259100 [exp] 436 / 2e-149 AT4G36250 556 / 0.0 aldehyde dehydrogenase 3F1 (.1) Potri.007G017100 [exp] 429 / 6e-147 AT4G36250 635 / 0.0 aldehyde dehydrogenase 3F1 (.1) Potri.008G106000 [exp] 137 / 9e-35 AT3G66658 1049 / 0.0 aldehyde dehydrogenase 22A1 (.1.2) Potri.010G174000 [exp] 115 / 2e-27 AT1G79440 810 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Potri.012G075600 [exp] 113 / 7e-27 AT1G74920 861 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.015G070600 [exp] 110 / 8e-26 AT1G74920 896 / 0.0 aldehyde dehydrogenase 10A8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [flax] [poplar] ALDH-like PF00171 [flax] [poplar] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Lus10025681 pacid=23145108 polypeptide=Lus10025681 locus=Lus10025681.g ID=Lus10025681.BGIv1.0 annot-version=v1.0 ATGGCGACGACGGCGACTGAGAAGGAGAACGCATCGGCGAGTTTCGGCGAGGTGGAAGCACAGCAGCTAGTCAGGGAGCTGAGAGATGCGTACGGTTCGG GAACGACTCGGAGCTACGACTGGAGAGTGACGCAGCTGAAGAACATCGTGACGATGTGCGACGAGAGCGAGAGAGACGTCGTCGATGCTCTCCGCAAGGA TCTTGATAAGCCTGAACTCGAAGCAACTCTCTACGAGCTCAGTATGATAAAGAATTCATGTAAACTAGCACTCAAGGAACTGAAAAACTGGATGAGACCG GAGAAGGCGAAAACCACACTGACGACTTTTCCTTCATCAGCCGAAGTTGTGTCCGAGCCATTTGGAGTCGTTTTGATAATTTCTGCATGGAACTACCCTT TTTATCTATCCATTGATCCTGTGATTGGGGCTATAGCAGCTGGCAATGCAGTGGTGTTGAAACCATCAGAATTAGCTCCTGCCTCATCATCATTGCTTGC GAAAATGTTCGCAAAGTATTTGGATAACTCTTCCATAAAGGTTATAGAAGGCGCTGTTTCTGAAACCTCAGCTCTGCTAGAGCAAAGGTGGGACAAAATA ATGTATACAGGTAATGGAAGAGTTGGACGGATTGTGATGGCTGCCGCTGCAAAGCACTTGACTCCTGTCATCATGGAGCTCGGGGGTAAATGTCCAGTGG TTGTCGATTCAGACATTAATTTACAGGTTGCAGTGAGGCGAATAATTGTTGGCAAGTGGGGTAATAACAATGGACAAGCATGCATATCCCCTGATTACAT TTTAACAACCAAAGATTTTGCACCGAAGCTGGTTGATGCTATGAAGACAGAACTCGATAGCTTTTACGGGAAGAATCAACTGAACTCGAAGGACTTGTCT CGTATTGTGAACTCTAACCATTTTGCTAGAATATCAAAGCTACTGGATGATGAGAAGGTTTCCAGTAAAATTGTCTATGGAGGTGAACGAGACGAAGCGA ATCTGAGAATCGCTCCGACTCTCTTGCTAGATGTTCCGAGGGATGCCTTGATAATGAGTGAAGAGATATTTGGTCCCTTGCTTCCCATCCTCACGTTGAA CGATATCAACGAGAGTTTCGATGTGATAAACTCGGGGTCCAAGCCGCTTGCAGCCTATATATTCACCAACAACAAGAAGCTCAAAGAGAAGTTTGTAATG TCAGTCTCTTCAGGGGGTATTGTCGTCAACGATACTACACTTCATCTAGCGGTCCATACTTTACCGTTCGGAGGTGTTGGCGAGAGTGGGGTGGGGTCAT ACCACGGGAAGTTCTCGTTCGATGCCTTCAGCCACAAGAAAGCAGTACTCTACCGAAGTTTCTTTGGGGATGCTCCGTTGAGGTACCCGCCTTACACAAG CACGAAACTAAGATTGATGAAAGCTTTAATGAGCGGCGGTTTCGTTGAGATTCTACGTGCACTGTTTGGTGGATCTAAACCTCCTTATAAGTCTGAATAA
AA sequence Show only first row Show all	>Lus10025681 pacid=23145108 polypeptide=Lus10025681 locus=Lus10025681.g ID=Lus10025681.BGIv1.0 annot-version=v1.0 MATTATEKENASASFGEVEAQQLVRELRDAYGSGTTRSYDWRVTQLKNIVTMCDESERDVVDALRKDLDKPELEATLYELSMIKNSCKLALKELKNWMRP EKAKTTLTTFPSSAEVVSEPFGVVLIISAWNYPFYLSIDPVIGAIAAGNAVVLKPSELAPASSSLLAKMFAKYLDNSSIKVIEGAVSETSALLEQRWDKI MYTGNGRVGRIVMAAAAKHLTPVIMELGGKCPVVVDSDINLQVAVRRIIVGKWGNNNGQACISPDYILTTKDFAPKLVDAMKTELDSFYGKNQLNSKDLS RIVNSNHFARISKLLDDEKVSSKIVYGGERDEANLRIAPTLLLDVPRDALIMSEEIFGPLLPILTLNDINESFDVINSGSKPLAAYIFTNNKKLKEKFVM SVSSGGIVVNDTTLHLAVHTLPFGGVGESGVGSYHGKFSFDAFSHKKAVLYRSFFGDAPLRYPPYTSTKLRLMKALMSGGFVEILRALFGGSKPPYKSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Lus10025681 [exp]	0	1
AT2G37710		RLK	receptor lectin kinase (.1)		Lus10033776 [exp]	2.4	0.9292
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Lus10012059 [exp]	4.5	0.9266
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10022102 [exp]	4.5	0.9244
AT2G36090			F-box family protein (.1)		Lus10017006 [exp]	6.5	0.9217
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Lus10021974 [exp]	9.9	0.9123
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Lus10004876 [exp]	10.2	0.9211
AT3G60600		(AT)VAP, (AT)VA...	VAMP/SYNAPTOBREVIN-ASSOCIATED ...		Lus10007463 [exp]	10.8	0.8949
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10030599 [exp]	10.8	0.9001
AT5G23810		AAP7	amino acid permease 7 (.1.2)		Lus10010580 [exp]	11.0	0.9328
AT4G12840			Protein of unknown function (D...		Lus10041107 [exp]	11.2	0.9174

Compare expression of checked genes

Lus10025681 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.