Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11040 238 / 5e-74 HSP40/DnaJ peptide-binding protein (.1) AT1G44160 219 / 1e-67 HSP40/DnaJ peptide-binding protein (.1) AT3G08910 171 / 9e-50 DNAJ heat shock family protein (.1) AT5G01390 168 / 3e-48 DNAJ heat shock family protein (.1.2.3.4) AT2G20560 166 / 9e-48 DNAJ heat shock family protein (.1) AT5G25530 166 / 2e-47 DNAJ heat shock family protein (.1) AT4G28480 164 / 1e-46 DNAJ heat shock family protein (.1.2) AT2G20550 158 / 3e-45 HSP40/DnaJ peptide-binding protein (.1.2) AT1G10350 159 / 1e-44 DNAJ heat shock family protein (.1) AT1G59725 153 / 8e-43 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018152 [exp] 662 / 0 AT1G11040 246 / 5e-77 HSP40/DnaJ peptide-binding protein (.1) Lus10029685 [exp] 356 / 2e-119 AT1G11040 257 / 1e-80 HSP40/DnaJ peptide-binding protein (.1) Lus10042725 [exp] 346 / 1e-115 AT1G11040 256 / 2e-80 HSP40/DnaJ peptide-binding protein (.1) Lus10017687 [exp] 165 / 3e-47 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10005033 [exp] 163 / 3e-46 AT3G08910 503 / 0.0 DNAJ heat shock family protein (.1) Lus10027803 [exp] 163 / 3e-46 AT3G08910 504 / 0.0 DNAJ heat shock family protein (.1) Lus10041254 [exp] 162 / 4e-46 AT5G25530 464 / 2e-165 DNAJ heat shock family protein (.1) Lus10021961 [exp] 161 / 8e-46 AT5G25530 468 / 7e-167 DNAJ heat shock family protein (.1) Lus10008109 [exp] 166 / 1e-44 AT5G25530 401 / 1e-132 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G081700 [exp] 290 / 3e-95 AT1G11040 253 / 1e-80 HSP40/DnaJ peptide-binding protein (.1) Potri.005G179400 [exp] 271 / 1e-87 AT1G11040 250 / 2e-79 HSP40/DnaJ peptide-binding protein (.1) Potri.001G211800 [exp] 202 / 3e-61 AT1G11040 197 / 2e-59 HSP40/DnaJ peptide-binding protein (.1) Potri.011G057601 [exp] 174 / 1e-50 AT2G20560 444 / 2e-157 DNAJ heat shock family protein (.1) Potri.007G136700 [exp] 169 / 8e-49 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.018G034600 [exp] 169 / 8e-49 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.006G246700 [exp] 169 / 1e-48 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.007G135700 [exp] 164 / 1e-46 AT2G20560 416 / 3e-146 DNAJ heat shock family protein (.1) Potri.017G016000 [exp] 163 / 3e-46 AT2G20560 419 / 4e-147 DNAJ heat shock family protein (.1) Potri.008G194000 [exp] 161 / 5e-46 AT1G10350 402 / 4e-141 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01556 [flax] [poplar] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10025682 pacid=23145043 polypeptide=Lus10025682 locus=Lus10025682.g ID=Lus10025682.BGIv1.0 annot-version=v1.0 ATGGTGGAAGAACGCCGTAATCCGGAGACGACCATTCGTTCGTGCTCACCGTGCGAGGATGTCGCGACTCAGAGCTGCGACAGCCGCGGAAACGTTAACA AGAAGTTCACGGCGGAGAAGAGCTGCAAGTGCTTCAGAGCTAAGGATTTCTGGAAGATCTACGGTTCCGTGATCGTGAAATGGTGTCACGTTAACAGTTC TTCTGTGAATTCGCCACCTTCTTCGCATCCTCCTACGATGCATTTTTCTTCTTCTTCGTCGTCGACTGCTTCTTATGATGGTAATAAGCCTGATTTCGAA GAGGCTGAACCATCGTCCTTACGGGCCGAAGAAGCGGAGAATCCAAACCGAATATCGAAACAAAGATCGAAAGAGAAAGATGAGTTCCTCCGAACCATAA CCTCTCCTCTTTCGAGAATCGTTAGCAGAATAAGCCCGTCATCTTCCCCTAAATCCAAGAGCGTCTCCCAGGTGTCCTCCTTCGTCTCCAGATGCATGAG CAGTCGTAAGACTGTTAGCGCTGATTGTGACCATACTAATGATCACGATCAACAATACTCTAATTCACCATCGCCCGTCTACTCTCTGTCCAGAGAGGCG AGTCAGAGGGGTGCAAGTACTCCAACAACGACCACGACAACTCCTCGTAATGTCGCGTTCTCGAGGAACGCGAGCCAGAGGAGCACGGCGCAGATCATGT TCTCGAATTCGACCGGTCGAAGGGTAAAGCCTCCGCCCGTGCAGAAGAATTTGGAGTGCACACTTGAGGAGTTGTTCTTTGGTTGCACCAAGAAGGTCAA GGTTACTAGAGATGTGCTCACCGATAGAGGGCAAATAGTACAGGAAGAGGAGATACTATCAATCCAAGTGAAGCCAGGTTGGAAGAGAGGAACAAAGATA ACATTCGAAGAAATGGGGAACGAGAGACTCGGAGCTCAGCCAGCAGACATAAATTTCGTGATCGTGGAGAAAGGACACCCACTGTTTCGACGAGAAGGCG ACGACTTGGAGTTAACCATAGAGATCCCTCTAGTGCAGGCTCTAACCGGCTGCGATATATTGATCCCTCTCATGGGAAACAGCGGAGAGACTATGAACCT TATGATCCAAGACATCATTTACCCCGGCTACCAGAAGATCATCTCAGGGAAAGGAATGCCGAAATCGAAAGAGGAAGAAGAAGGCGGCAGAGGCGACCTA AGAGTTCTGTTCTTGGTTGAGTTCCCGACCGAATTGACCGAAGAACAGAGATCAGAAGTTGTTAGCATTTTAGAGGGTTCTTCTTGA
AA sequence Show only first row Show all	>Lus10025682 pacid=23145043 polypeptide=Lus10025682 locus=Lus10025682.g ID=Lus10025682.BGIv1.0 annot-version=v1.0 MVEERRNPETTIRSCSPCEDVATQSCDSRGNVNKKFTAEKSCKCFRAKDFWKIYGSVIVKWCHVNSSSVNSPPSSHPPTMHFSSSSSSTASYDGNKPDFE EAEPSSLRAEEAENPNRISKQRSKEKDEFLRTITSPLSRIVSRISPSSSPKSKSVSQVSSFVSRCMSSRKTVSADCDHTNDHDQQYSNSPSPVYSLSREA SQRGASTPTTTTTTPRNVAFSRNASQRSTAQIMFSNSTGRRVKPPPVQKNLECTLEELFFGCTKKVKVTRDVLTDRGQIVQEEEILSIQVKPGWKRGTKI TFEEMGNERLGAQPADINFVIVEKGHPLFRREGDDLELTIEIPLVQALTGCDILIPLMGNSGETMNLMIQDIIYPGYQKIISGKGMPKSKEEEEGGRGDL RVLFLVEFPTELTEEQRSEVVSILEGSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11040			HSP40/DnaJ peptide-binding pro...		Lus10025682 [exp]	0	1
					Lus10003272 [exp]	3.0	1.0000
					Lus10010826 [exp]	4.2	1.0000
					Lus10022108 [exp]	5.2	1.0000
AT2G36780			UDP-Glycosyltransferase superf...		Lus10023893 [exp]	6.0	1.0000
AT3G47090			Leucine-rich repeat protein ki...		Lus10028479 [exp]	7.1	1.0000
					Lus10030783 [exp]	7.7	1.0000
					Lus10036152 [exp]	8.4	1.0000
					Lus10037861 [exp]	8.9	1.0000
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10037952 [exp]	9.5	1.0000
AT3G54310			unknown protein		Lus10004782 [exp]	10.5	0.9630

Compare expression of checked genes

Lus10025682 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.