Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31115 149 / 8e-45 Protein of unknown function (DUF1997) (.1), Protein of unknown function (DUF1997) (.2) AT5G04440 65 / 1e-12 Protein of unknown function (DUF1997) (.1) AT5G39520 45 / 1e-05 Protein of unknown function (DUF1997) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018151 [exp] 376 / 8e-135 AT4G31115 156 / 1e-47 Protein of unknown function (DUF1997) (.1), Protein of unknown function (DUF1997) (.2) Lus10026864 [exp] 168 / 2e-52 AT4G31115 244 / 2e-81 Protein of unknown function (DUF1997) (.1), Protein of unknown function (DUF1997) (.2) Lus10038659 [exp] 63 / 1e-11 AT5G04440 345 / 6e-121 Protein of unknown function (DUF1997) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G179800 [exp] 158 / 1e-48 AT4G31115 205 / 4e-66 Protein of unknown function (DUF1997) (.1), Protein of unknown function (DUF1997) (.2) Potri.008G030300 [exp] 67 / 2e-13 AT5G04440 342 / 5e-120 Protein of unknown function (DUF1997) (.1) Potri.010G230900 [exp] 62 / 1e-11 AT5G04440 330 / 2e-115 Protein of unknown function (DUF1997) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09366 [flax] [poplar] DUF1997 Protein of unknown function (DUF1997)
Representative CDS sequence Show only first row Show all	>Lus10025683 pacid=23144943 polypeptide=Lus10025683 locus=Lus10025683.g ID=Lus10025683.BGIv1.0 annot-version=v1.0 ATGGCATACAAACAAGCTGCATTAGGAGGCACAAAGAAAGCACATTTATCTGCTGCAAGAAACAAGAGGCTGAAGCTTCATGATCATGCCACTTGCACAT TTATGAGTGAGTTCTTAAGCCTTCCTCAAGGAGTGGAGTCTGCTTTGAACGTCAAGTCTGTCCAGAGCTTTCAAGTTCTCAACGACTCGACTTACCGGTT AGTCCTTCCGGAAGTGCGGCTCCTGAGCTTCGATGCTTGTCCGGTCATGGATCTACGCGTCGCCACAACTTCGCAAGACTTCACCGTCGAGATGCTTTCT TTCAAGTTCCAAGGTGCAGAGGCCATGGAAAGTGCAAATGACCATCTCAAAGGTTTAATGGTGAGCCGTATCATGTGGCACAGCAAAGGTTCCGAGTCGT TTCTCGAGCTCAAGATGCAACTCGACTTAACAATGGAGCTGGTGCAACTGCCTTTCTCGTTGCTGCCTCCTGCAGCTGTTGAAATCCCTGGGAATCTGAT AATGGAAGCTGTAGTGGACAATCTGAGTAAAGAGCTGCTGGAGAAGGTGGTTGAAGATTATGAGCAGTGGATGATGATGAAGAAGCAACAAAAGCTTGGG GGAAAAGCATGA
AA sequence Show only first row Show all	>Lus10025683 pacid=23144943 polypeptide=Lus10025683 locus=Lus10025683.g ID=Lus10025683.BGIv1.0 annot-version=v1.0 MAYKQAALGGTKKAHLSAARNKRLKLHDHATCTFMSEFLSLPQGVESALNVKSVQSFQVLNDSTYRLVLPEVRLLSFDACPVMDLRVATTSQDFTVEMLS FKFQGAEAMESANDHLKGLMVSRIMWHSKGSESFLELKMQLDLTMELVQLPFSLLPPAAVEIPGNLIMEAVVDNLSKELLEKVVEDYEQWMMMKKQQKLG GKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31115			Protein of unknown function (D...		Lus10025683 [exp]	0	1
AT3G48950			Pectin lyase-like superfamily ...		Lus10027516 [exp]	2.2	0.7616
AT1G48130		ATPER1	1-cysteine peroxiredoxin 1 (.1...		Lus10018342 [exp]	4.5	0.7580
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028896 [exp]	10.1	0.7396
AT4G30320			CAP (Cysteine-rich secretory p...		Lus10019993 [exp]	11.4	0.7284
AT1G12560		ATHEXPALPHA1.26...	expansin A7 (.1)		Lus10006711 [exp]	15.7	0.7159
AT3G14820			GDSL-like Lipase/Acylhydrolase...		Lus10028424 [exp]	18.5	0.7216
AT4G02270		RHS13	root hair specific 13 (.1)		Lus10013419 [exp]	21.8	0.6979
AT5G05500		MOP10	Pollen Ole e 1 allergen and ex...		Lus10009837 [exp]	23.4	0.6768
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10013802 [exp]	23.6	0.7305
AT1G63450		RHS8	root hair specific 8 (.1)		Lus10000604 [exp]	23.7	0.6843

Compare expression of checked genes

Lus10025683 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.