Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G07050 1171 / 0 CAS1 cycloartenol synthase 1 (.1) AT3G45130 886 / 0 LAS1 lanosterol synthase 1 (.1) AT1G78955 809 / 0 CAMS1 camelliol C synthase 1 (.1) AT1G78960 787 / 0 ATLUP2 lupeol synthase 2 (.1) AT1G78950 780 / 0 ATLUP3 Terpenoid cyclases family protein (.1) AT1G66960 749 / 0 ATLUP5 Terpenoid cyclases family protein (.1) AT1G78970 745 / 0 ATLUP1, LUP1 ARABIDOPSIS THALIANA LUPEOL SYNTHASE 1, lupeol synthase 1 (.1.2) AT1G78500 671 / 0 ATPEN6 Terpenoid cyclases family protein (.1) AT5G36150 663 / 0 ATPEN3 putative pentacyclic triterpene synthase 3 (.1) AT4G15340 652 / 0 04C11, ATPEN1 pentacyclic triterpene synthase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014538 [exp] 1304 / 0 AT2G07050 1350 / 0.0 cycloartenol synthase 1 (.1) Lus10032146 [exp] 1303 / 0 AT2G07050 1346 / 0.0 cycloartenol synthase 1 (.1) Lus10026079 [exp] 778 / 0 AT1G78955 1002 / 0.0 camelliol C synthase 1 (.1) Lus10013546 [exp] 751 / 0 AT1G78955 1081 / 0.0 camelliol C synthase 1 (.1) Lus10016441 [exp] 719 / 0 AT1G78955 1035 / 0.0 camelliol C synthase 1 (.1) Lus10008544 [exp] 717 / 0 AT2G07050 890 / 0.0 cycloartenol synthase 1 (.1) Lus10033355 [exp] 682 / 0 AT1G78960 998 / 0.0 lupeol synthase 2 (.1) Lus10016440 [exp] 617 / 0 AT1G78950 838 / 0.0 Terpenoid cyclases family protein (.1) Lus10016439 [exp] 594 / 0 AT1G78960 874 / 0.0 lupeol synthase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G079300 [exp] 1188 / 0 AT2G07050 1333 / 0.0 cycloartenol synthase 1 (.1) Potri.018G148800 [exp] 1159 / 0 AT2G07050 1296 / 0.0 cycloartenol synthase 1 (.1) Potri.007G002200 [exp] 1095 / 0 AT2G07050 1186 / 0.0 cycloartenol synthase 1 (.1) Potri.006G079200 [exp] 988 / 0 AT2G07050 1116 / 0.0 cycloartenol synthase 1 (.1) Potri.014G002400 [exp] 828 / 0 AT1G78950 1245 / 0.0 Terpenoid cyclases family protein (.1) Potri.007G002500 [exp] 808 / 0 AT1G78950 1244 / 0.0 Terpenoid cyclases family protein (.1) Potri.004G132500 [exp] 774 / 0 AT1G78955 935 / 0.0 camelliol C synthase 1 (.1) Potri.007G002100 [exp] 773 / 0 AT1G78955 1074 / 0.0 camelliol C synthase 1 (.1) Potri.001G049100 [exp] 769 / 0 AT1G78955 1141 / 0.0 camelliol C synthase 1 (.1) Potri.011G085000 [exp] 764 / 0 AT1G78955 932 / 0.0 camelliol C synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00432 [flax] [poplar] Prenyltrans Prenyltransferase and squalene oxidase repeat
Representative CDS sequence Show only first row Show all	>Lus10025684 pacid=23144941 polypeptide=Lus10025684 locus=Lus10025684.g ID=Lus10025684.BGIv1.0 annot-version=v1.0 ATGTGGAAGCTGAAGATAGCGGAGGGAGGGAATCCATGGCTGAGGACCACTAACGATCATGTAGGAAGGCATGTATGGGAGTTCGATCCAGAGCTCGGAT CCCCCGAGGAGCTATCTGCGATTGAGCGAGTTCGTCAAGTATTCACCAAGAATCGATTCGAAAAGAAACACAGTGCTGATCTCCTTATGCGCATTCAGTT TGCCAAGGAGAATCCATTGAAACATGTGTTACCTCAAGTTAAACTAAGTGAGAAAGAAGATGTTACAGAGGAGGCACTGACCGTGACTTTAAGAAGGGCT TTAGATTACTATTCAACTATACAGGCTGATGATGGTCACTGGCCGGGAGATTATGGAGGTCCTATGTTTCTCATGCCTGGTTTGAATGAAGATGGTGGTT GGGGCTTGCATATTGAAGGGCCCAGCACTATGTTTGGAAGTGTTTTAAGTTATGTCACATTACGGTTGCTCGGTGAGGGAGCTAACGGTGGAGAAGGAGC GATGGAAAAAGGGCGCGACTGGATCTTGAACCACGGCGGAGCTACTGCAATCACCTCCTGGGGGAAAATGTGGCTTTCAGTACTTGGAGTATTTGAGTGG TCTGGCAATAATCCCCTACCCCCTGAGACTTGGCTCCTTCCTTACATACTCCCATTCCATCCAGGAAGGATGTGGTGTCATTGCCGGATGGTCTACTTGC CTATGTCCTATTTATATGGGAAGAGGTTCGTTGGTCCCATCACCCCGACAGTACTATCATTGAGAAAGGAGCTTTTCACTGTCCAATATCAAGAAGTTGA CTGGAATCAAGCACGCAATGAATGTGCAAAGGAGGATCTATACTACCCGCACCCTCTGATTCAAGATTTGCTATGGGGATCCCTTCACAACTTTGTTGAA CCTCTTCTGATGGCTTGGCCTGGAAACAAGTTGAGAGAAAAGGCACTTCGGACTACACTAGAGCACATACACTATGAAGATGAAAACACTCGTTATATTT GCATAGGCCCTGTAAATAAGGTGTTAAATATGCTCTGTTGTTGGGTGGAGGACCCAAACTCAGAAGCTTTTAAGCTGCATCTTCCAAGGATTCATGATTA CCTTTGGGTTGCTGAGGATGGAATGAAAATGCAGGGGTATAATGGAAGTCAATTATGGGATATCTCTTTTGCTATTCAAGCAATTATCTCAACTAACCTT ATTGAGGAATATGGTTCAACTCTTAAAAAAGCACACACATTCGTAAAGAACTCACAGGTCTTGGAAGATTGCCCTGGAGACCTTGATTACTGGTATAGAC ACATATCTAAGGGTGCATGGCCTTTCTCAACGGCTGACCATGGATGGCCTATCTCAGACTGCACAGCTGAGGGATTAAAAGCAGCTCTCTTACTTTCACA AATGCCCTCAGAGCTTGTTGGAGAACCACTTGAAGCACAAAGATACTACGATTCTGTAAATGTGATTTTGTCATTACAGAATGCTGATGGTAGCTTCGCA ACGTATGAACTCACAAGATCCTATAGCTGGATGGAGGGGATCAACCCAGCTGAAACCTTTGGTGACATCGTTATTGATTACCCTTATGTTGAATGTACTT CAGCGGCAATTCAAGCTTTAATACCGTTCAAGAAAATTTATCCTGGACACCGGTCAGCAGAAGTGGACACTTGTATCGAAAAAGCTGTTGCGTTCATTGA ATCGATACAAGCTGCAGATGGCTCGTGGTATGGCTCATGGGCTGTTTGCTTCACGTACGGTACATGGTTTGGCATAAAAGGATTGGTCGCTAGTGGAAAG TACTTCGATAATAGTTCTAGCATACGAAAAGCATGCAACTTTATGCTGTCCAAGCAGTTGTCTTCGGGTGGCTGGGGAGAGAGCTATCTTTCATGTCAAA CCAAGGTGTATCACAATCTTGAAGGTGATAATGGGCATGTGGTCAATACCGGATGGGCGATGTTGGCACTCATTGCTGCTGGCCAGGAAATAATGGGAGT TTTCAACAAGAACTGTATGATAACTTATGCAGCTTACAGAGACATATTTCCATTATGGGCATTGGGAGAATACAGAACCCGACTACTGCAACTTCAGCCT TCTTCTTAA
AA sequence Show only first row Show all	>Lus10025684 pacid=23144941 polypeptide=Lus10025684 locus=Lus10025684.g ID=Lus10025684.BGIv1.0 annot-version=v1.0 MWKLKIAEGGNPWLRTTNDHVGRHVWEFDPELGSPEELSAIERVRQVFTKNRFEKKHSADLLMRIQFAKENPLKHVLPQVKLSEKEDVTEEALTVTLRRA LDYYSTIQADDGHWPGDYGGPMFLMPGLNEDGGWGLHIEGPSTMFGSVLSYVTLRLLGEGANGGEGAMEKGRDWILNHGGATAITSWGKMWLSVLGVFEW SGNNPLPPETWLLPYILPFHPGRMWCHCRMVYLPMSYLYGKRFVGPITPTVLSLRKELFTVQYQEVDWNQARNECAKEDLYYPHPLIQDLLWGSLHNFVE PLLMAWPGNKLREKALRTTLEHIHYEDENTRYICIGPVNKVLNMLCCWVEDPNSEAFKLHLPRIHDYLWVAEDGMKMQGYNGSQLWDISFAIQAIISTNL IEEYGSTLKKAHTFVKNSQVLEDCPGDLDYWYRHISKGAWPFSTADHGWPISDCTAEGLKAALLLSQMPSELVGEPLEAQRYYDSVNVILSLQNADGSFA TYELTRSYSWMEGINPAETFGDIVIDYPYVECTSAAIQALIPFKKIYPGHRSAEVDTCIEKAVAFIESIQAADGSWYGSWAVCFTYGTWFGIKGLVASGK YFDNSSSIRKACNFMLSKQLSSGGWGESYLSCQTKVYHNLEGDNGHVVNTGWAMLALIAAGQEIMGVFNKNCMITYAAYRDIFPLWALGEYRTRLLQLQP SS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Lus10025684 [exp]	0	1
AT4G14720	ZIM	TIFY4B, PPD2	PEAPOD 2, TIFY domain/Divergen...		Lus10000490 [exp]	7.5	0.8819
AT3G20015			Eukaryotic aspartyl protease f...		Lus10017362 [exp]	19.3	0.8665
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Lus10020835 [exp]	24.1	0.8611
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10043046 [exp]	30.3	0.8632
AT1G02260			Divalent ion symporter (.1)		Lus10027497 [exp]	32.2	0.8630
AT3G20015			Eukaryotic aspartyl protease f...		Lus10010157 [exp]	34.2	0.8562
AT1G32640	bHLH	JIN1, JAI1, ZBF...	JASMONATE INSENSITIVE 1, Basic...		Lus10005999 [exp]	35.5	0.8611
AT4G13260		YUC2	YUCCA2, Flavin-binding monooxy...		Lus10023637 [exp]	45.4	0.8102
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10006667 [exp]	58.1	0.8477
AT4G28390		ATAAC3, AAC3	ADP/ATP carrier 3 (.1)		Lus10018611 [exp]	61.2	0.8409

Compare expression of checked genes

Lus10025684 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.