Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43660 191 / 2e-61 Vacuolar iron transporter (VIT) family protein (.1) AT3G43630 179 / 5e-57 Vacuolar iron transporter (VIT) family protein (.1) AT1G21140 179 / 5e-57 Vacuolar iron transporter (VIT) family protein (.1) AT1G76800 166 / 1e-51 Vacuolar iron transporter (VIT) family protein (.1) AT3G25190 122 / 4e-34 Vacuolar iron transporter (VIT) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018150 [exp] 340 / 2e-119 AT3G43660 244 / 2e-82 Vacuolar iron transporter (VIT) family protein (.1) Lus10031543 [exp] 177 / 1e-55 AT3G43660 268 / 5e-92 Vacuolar iron transporter (VIT) family protein (.1) Lus10042804 [exp] 177 / 1e-55 AT3G43660 276 / 2e-95 Vacuolar iron transporter (VIT) family protein (.1) Lus10028596 [exp] 177 / 2e-55 AT3G43660 279 / 4e-96 Vacuolar iron transporter (VIT) family protein (.1) Lus10031922 [exp] 172 / 5e-54 AT3G43660 286 / 4e-99 Vacuolar iron transporter (VIT) family protein (.1) Lus10035086 [exp] 172 / 1e-53 AT3G43660 284 / 2e-98 Vacuolar iron transporter (VIT) family protein (.1) Lus10029776 [exp] 165 / 7e-51 AT3G43660 273 / 4e-94 Vacuolar iron transporter (VIT) family protein (.1) Lus10015135 [exp] 119 / 6e-34 AT3G43660 200 / 4e-66 Vacuolar iron transporter (VIT) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G106000 [exp] 173 / 4e-54 AT3G43660 219 / 9e-73 Vacuolar iron transporter (VIT) family protein (.1) Potri.002G069400 [exp] 168 / 4e-52 AT3G43630 238 / 5e-80 Vacuolar iron transporter (VIT) family protein (.1) Potri.005G190800 [exp] 167 / 1e-51 AT1G76800 232 / 6e-78 Vacuolar iron transporter (VIT) family protein (.1) Potri.001G456000 [exp] 85 / 2e-19 AT3G43660 66 / 1e-12 Vacuolar iron transporter (VIT) family protein (.1) Potri.011G146100 [exp] 57 / 1e-09 AT3G43660 97 / 3e-24 Vacuolar iron transporter (VIT) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01988 [flax] [poplar] VIT1 VIT family
Representative CDS sequence Show only first row Show all	>Lus10025685 pacid=23145041 polypeptide=Lus10025685 locus=Lus10025685.g ID=Lus10025685.BGIv1.0 annot-version=v1.0 ATGGCCCTAAGCTCAACCTCGAAATCCACCCCATCTTCCGATCTCGAGTTAGCCATCCCGCCAACCCCAAACCGCGAGCTGGTCAAGCCAGGAGAAGCAA CGACGACTGAAACTATTGTCTCCGTCGACTACTCGAAGCGGGCCCAGTGGCTCCGGGCAGCTGTCCTGGGAGCCAACGATGGACTGCTCTCCACCTCATC GCTAATGATGGGGATCGGAGCAGTCCATAAGGACTCCACGACCATGGTGCTGGCTGGCTTGGCTGGCCTGGTGGCTGGAGCAGGCAGCATGGCCACAGGC GAATTTGTCTCCGTCTACTCCCAGCGCGACATCCAGGTGGCTCAGCTTAATAGGGAGCTGAACTCGTCTGCAATCTCGAGAGTCGAGTATCTGGAGAGGA AGAAAAAGGAGGTCCCTAGTCCGGCCAAAGCAGCACTGGCCTCGGGTGTTGCTTTCGCTGTAGGAGCCCTGGTCCCGCTACTTGGAGCCGCGTTCGTGAA GGAGTACACCGTGCGGATTGGGTTGGTGGTCGGGTTGGCCAGCTTGGCACTGTTTGGGTTCGGGTGGTTGAGTGCAGTTCTAGGTGGTGCGCCCGTGGTT AAGTCGTCGATTAGGGTTTTGGTTGGTGGTTGGTTCTCCATGGCGGTTACTTTTGGGCTTACCAAGGCTATTGGTACTGCTGCTGGGATCAATTAA
AA sequence Show only first row Show all	>Lus10025685 pacid=23145041 polypeptide=Lus10025685 locus=Lus10025685.g ID=Lus10025685.BGIv1.0 annot-version=v1.0 MALSSTSKSTPSSDLELAIPPTPNRELVKPGEATTTETIVSVDYSKRAQWLRAAVLGANDGLLSTSSLMMGIGAVHKDSTTMVLAGLAGLVAGAGSMATG EFVSVYSQRDIQVAQLNRELNSSAISRVEYLERKKKEVPSPAKAALASGVAFAVGALVPLLGAAFVKEYTVRIGLVVGLASLALFGFGWLSAVLGGAPVV KSSIRVLVGGWFSMAVTFGLTKAIGTAAGIN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G43660			Vacuolar iron transporter (VIT...		Lus10025685 [exp]	0	1
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Lus10007702 [exp]	1.4	0.9385
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10011058 [exp]	1.4	0.9497
AT3G15810			Protein of unknown function (D...		Lus10032602 [exp]	2.0	0.9271
AT2G28780			unknown protein		Lus10024409 [exp]	3.0	0.9354
AT2G33810	SBP	SPL3	squamosa promoter binding prot...		Lus10015421 [exp]	3.2	0.9215
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Lus10022673 [exp]	3.7	0.9174
AT5G50890			alpha/beta-Hydrolases superfam...		Lus10001506 [exp]	4.9	0.8894
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10014407 [exp]	5.7	0.9166
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Lus10000963 [exp]	5.9	0.8634
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10020353 [exp]	6.0	0.8927

Compare expression of checked genes

Lus10025685 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.