Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26410 472 / 6e-166 TRM11, AtTRM11 tRNA modification 11, methyltransferases;nucleic acid binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018149 [exp] 612 / 0 AT3G26410 731 / 0.0 tRNA modification 11, methyltransferases;nucleic acid binding (.1) Lus10018147 [exp] 114 / 2e-10 AT3G26410 206 / 2e-62 tRNA modification 11, methyltransferases;nucleic acid binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G207000 [exp] 494 / 1e-174 AT3G26410 695 / 0.0 tRNA modification 11, methyltransferases;nucleic acid binding (.1) Potri.003G022650 [exp] 145 / 4e-43 AT3G26410 134 / 1e-38 tRNA modification 11, methyltransferases;nucleic acid binding (.1) Potri.003G022701 [exp] 76 / 3e-17 AT3G26410 93 / 6e-24 tRNA modification 11, methyltransferases;nucleic acid binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01170 [flax] [poplar] UPF0020 Putative RNA methylase family UPF0020
Representative CDS sequence Show only first row Show all	>Lus10025686 pacid=23145006 polypeptide=Lus10025686 locus=Lus10025686.g ID=Lus10025686.BGIv1.0 annot-version=v1.0 ATGGCACTTGTCTATCCTGTTCGTATTTTGTTGAGTGATCGAGCTGGTAGAGTGAACTTGAAACACCCAGAGCATAAATTCTGGCTCATGGAGACTGATG ACTACGGAGGCAACAATGGACTGCCACCAGTTGTGGCAAAAAGAATCTTCTTCGGCCGTGAGATTGGTGGCTCCGACAGGAAGCTTATACCTACTTACCA GCTGAAAAGCCGAACTTATCTCGGACCGACAGCGATGGACGCTGAAATGGCCTTCTTGATGGCCAATCAAGCACTTGTCAAGCCCGGGAAACTTGTTTAC GACCTTGTTGTAGGGACCGGCAGTATTTTGATCGGTGCTGCTCACTTCGGAGCCATGACAATGGGTGCTGACATTGATATTAGAGTAGTTCGAGATGGAC GTGGCCCTGATCGCAATGTTTGGAGCAATTTCAAGCAGTACGGACTCCCTGATCCAGTTGGCCTTTTAAGGGTTGATAACAACCTTCCTCCATGGCGGCC TGGATTAAAAGAGATTTTCGACGCCATAATCTGTGATCCACCATACGGAGTCCGTGCCGGAGGCCGCAAATCCGGTGGCCGAAAGCTCCTGAAGGGAGTC ATCGGACCCTACACGGTCCCCGACGAAAAGAGAACAGACCACATACCTTCAACTGCACCTTACAGTCTAGTCGAATGCGTCCACGATTTACTCGACCTCG CTGGAAAGATGCTCGTGATGGGCGGCCGGCTAGTCTACTTCTACCCAGTGCTACGAGAAGAAGAGTCCGTTGAAGTCACCTTCCCGGAACACCCGTGTTT CGAACTGATATCCTCGTCGGAGCAGATCCTTAGCTCGCGATACAGCCGTGTTTTACTAACCATGGTGAAGAGGAGTCCTTACACCGAAGAGGTGGCTTCG AAAGCTAAGGCGATGCACGCTGATTTCCGGGAGAACCATGTTAAGTGGATGGAGGATGGGAATCTCCATTCCTCTGTTTTTTGTCCAGCGGATCAGCTGA CTATGGCGGGTGATAATTCCAAGTCTTTTAAAGAACTGAAACCTAAATACAGAGGGAAGTATGTCTAG
AA sequence Show only first row Show all	>Lus10025686 pacid=23145006 polypeptide=Lus10025686 locus=Lus10025686.g ID=Lus10025686.BGIv1.0 annot-version=v1.0 MALVYPVRILLSDRAGRVNLKHPEHKFWLMETDDYGGNNGLPPVVAKRIFFGREIGGSDRKLIPTYQLKSRTYLGPTAMDAEMAFLMANQALVKPGKLVY DLVVGTGSILIGAAHFGAMTMGADIDIRVVRDGRGPDRNVWSNFKQYGLPDPVGLLRVDNNLPPWRPGLKEIFDAIICDPPYGVRAGGRKSGGRKLLKGV IGPYTVPDEKRTDHIPSTAPYSLVECVHDLLDLAGKMLVMGGRLVYFYPVLREEESVEVTFPEHPCFELISSSEQILSSRYSRVLLTMVKRSPYTEEVAS KAKAMHADFRENHVKWMEDGNLHSSVFCPADQLTMAGDNSKSFKELKPKYRGKYV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26410		TRM11, AtTRM11	tRNA modification 11, methyltr...		Lus10025686 [exp]	0	1
AT1G36280			L-Aspartase-like family protei...		Lus10028260 [exp]	3.9	0.9393
AT4G02930			GTP binding Elongation factor ...		Lus10027995 [exp]	5.6	0.9515
AT4G29510		ATPRMT1B, ATPRM...	PROTEIN ARGININE METHYLTRANSFE...		Lus10040546 [exp]	5.7	0.9423
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Lus10039260 [exp]	6.8	0.9511
AT3G58570			P-loop containing nucleoside t...		Lus10015978 [exp]	9.9	0.9079
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10035414 [exp]	12.8	0.9406
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10007619 [exp]	14.5	0.9306
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10031021 [exp]	18.7	0.9370
AT3G66652			fip1 motif-containing protein ...		Lus10016905 [exp]	20.1	0.9327
AT1G74050			Ribosomal protein L6 family pr...		Lus10039084 [exp]	20.8	0.9383

Compare expression of checked genes

Lus10025686 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.