Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77480 461 / 2e-161 Eukaryotic aspartyl protease family protein (.1.2) AT1G44130 451 / 1e-157 Eukaryotic aspartyl protease family protein (.1) AT4G33490 411 / 1e-141 Eukaryotic aspartyl protease family protein (.1.2) AT1G49050 309 / 7e-100 Eukaryotic aspartyl protease family protein (.1.2) AT5G22850 130 / 3e-33 Eukaryotic aspartyl protease family protein (.1) AT3G02740 128 / 2e-32 Eukaryotic aspartyl protease family protein (.1) AT2G36670 128 / 3e-32 Eukaryotic aspartyl protease family protein (.1.2) AT1G05840 125 / 2e-31 Eukaryotic aspartyl protease family protein (.1) AT5G36260 125 / 2e-31 Eukaryotic aspartyl protease family protein (.1) AT2G17760 125 / 2e-31 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018146 [exp] 765 / 0 AT1G77480 460 / 1e-160 Eukaryotic aspartyl protease family protein (.1.2) Lus10020874 [exp] 409 / 7e-140 AT4G33490 563 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10033503 [exp] 407 / 9e-140 AT4G33490 560 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10018148 [exp] 317 / 3e-106 AT1G44130 227 / 2e-71 Eukaryotic aspartyl protease family protein (.1) Lus10042982 [exp] 311 / 1e-100 AT1G49050 569 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10032485 [exp] 231 / 4e-70 AT1G49050 475 / 6e-163 Eukaryotic aspartyl protease family protein (.1.2) Lus10028411 [exp] 134 / 2e-34 AT2G17760 527 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10027732 [exp] 134 / 2e-34 AT2G36670 634 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10035556 [exp] 134 / 2e-33 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G179900 [exp] 508 / 1e-179 AT1G44130 501 / 2e-177 Eukaryotic aspartyl protease family protein (.1) Potri.002G081400 [exp] 504 / 1e-177 AT1G44130 449 / 1e-156 Eukaryotic aspartyl protease family protein (.1) Potri.005G069600 [exp] 403 / 2e-138 AT4G33490 530 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.007G099200 [exp] 389 / 6e-133 AT4G33490 521 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.007G099301 [exp] 372 / 2e-126 AT4G33490 503 / 6e-178 Eukaryotic aspartyl protease family protein (.1.2) Potri.015G053300 [exp] 300 / 2e-96 AT1G49050 611 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.019G054900 [exp] 132 / 9e-34 AT3G02740 572 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G118800 [exp] 130 / 3e-33 AT2G36670 585 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.001G213600 [exp] 127 / 3e-32 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G020200 [exp] 127 / 1e-31 AT5G43100 807 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10025687 pacid=23145116 polypeptide=Lus10025687 locus=Lus10025687.g ID=Lus10025687.BGIv1.0 annot-version=v1.0 ATGGCGTCATCATCATCCATGGTGGTGGTAAAGATTGCGACTTTGATTGCTCTGATCATTGCCTTGACGGCGTCGTTTCAAGGCTGTTCTGCGGCAAAGA CGACTGGCTTTGGGCTTGGGTTTCTGGGTGGTAATTGGAAGAAGACAGCCGACAATACACTTGGCGAAGCCACCGTCTTCCCCGTCACTGGCAATGTTTA CCCTCTTGGGTACTACTCTGCGTCAATAAGCATAGGCAATCCACCAAAGGTCTTCGATTTGGATGTCGACACCGGCAGCGACATCACTTGGGTCCAATGC GATGCCCCTTGCACCGGCTGCACCAAGCCGTTGCAAAGTCTGTACAAGCCTAGGAACAATCTGGTACCCTGTTCAGACACCTTATGCGCCTCGGTTCAAC CGACCGGAAAAGTCAACTGTCCGAAACCCGACGAGCAGTGTGACTACGTGGTTCAATACGCTGATCAAGGCTCGTCCCTTGGCGTGCTGGTCCAAGACAA CTTTCCTCTCCGCTTGACTAATGGCTCGTTATTTAGCCCCCGCCTAGCCTTTGGTTGTGGATATGATCAGAAGAATCCGAGCCCAACATCTACTTCCACA GCAGGAGTCCTGGGCCTCAGTAGTAGCGAAGCGAGCATTAACTCGCAACTGCAAAAAATGGGTCTAGTGCAGAATGTGGTTAGTCACTGTTTTGGCGGAC AAGGGGACGGATATCTGTTCTTTGGAAACTCTCTCGTACCTTCGTCTGGCGTAAGCTGGACTCCAATGTTGCATGATGCCCCGGACAAACACTATTTGGC TGGGCCAGCAGAACTGGTCTTTAGCGGGAAGTATACTGGTCTGAAGGGGCTACAATTCGTTTTCGACAGTGGGAGCTCGTTCACTTACTTCAATTCCATG GTTTACGAAACCGCCCTTGATTTGATAAAGAAAGATTTGAATGGAAAGCTTAAAGATGCACCGGAGGAGCCGGCACTTGATGTCTGCTGGAAAGGCTCGA AACCGTTCAAGTCTCTGGACGATGTCAAGGGACACTTCAAACCATTGGCTCTTAGCTTTACGAGATCGAAGAATGGTCAGCTTGAGGTACCACCAGAGAA CTACCTGATCGTGACGAAAAGCGGGAATGTGTGTTTGGGGATCCTTAATGGCAGCGAAGTTGGACTGGGGAACTTAAATGTGGTTGGCGACATTTCCATG CAAGACAAGCTGGTGATCTACGACAACGAGAAGCATCGAATCGGATGGATACCTTCCGACTGCAAGAAACTTCCAAAGTCCTGA
AA sequence Show only first row Show all	>Lus10025687 pacid=23145116 polypeptide=Lus10025687 locus=Lus10025687.g ID=Lus10025687.BGIv1.0 annot-version=v1.0 MASSSSMVVVKIATLIALIIALTASFQGCSAAKTTGFGLGFLGGNWKKTADNTLGEATVFPVTGNVYPLGYYSASISIGNPPKVFDLDVDTGSDITWVQC DAPCTGCTKPLQSLYKPRNNLVPCSDTLCASVQPTGKVNCPKPDEQCDYVVQYADQGSSLGVLVQDNFPLRLTNGSLFSPRLAFGCGYDQKNPSPTSTST AGVLGLSSSEASINSQLQKMGLVQNVVSHCFGGQGDGYLFFGNSLVPSSGVSWTPMLHDAPDKHYLAGPAELVFSGKYTGLKGLQFVFDSGSSFTYFNSM VYETALDLIKKDLNGKLKDAPEEPALDVCWKGSKPFKSLDDVKGHFKPLALSFTRSKNGQLEVPPENYLIVTKSGNVCLGILNGSEVGLGNLNVVGDISM QDKLVIYDNEKHRIGWIPSDCKKLPKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77480			Eukaryotic aspartyl protease f...		Lus10025687 [exp]	0	1
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10031484 [exp]	1.4	0.9138
AT1G42990	bZIP	AtBZIP60	Bbasic region/leucine zipper m...		Lus10021534 [exp]	2.0	0.8954
AT1G74950	ZIM	TIFY10B, JAZ2	JASMONATE-ZIM-DOMAIN PROTEIN 2...		Lus10013166 [exp]	3.9	0.8778
AT2G27310			F-box family protein (.1)		Lus10013309 [exp]	4.5	0.8973
AT5G18150			Methyltransferase-related prot...		Lus10019138 [exp]	5.3	0.8573
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10013151 [exp]	9.2	0.8955
AT4G24160			alpha/beta-Hydrolases superfam...		Lus10024310 [exp]	12.5	0.8506
AT3G55430			O-Glycosyl hydrolases family 1...		Lus10040294 [exp]	12.8	0.8548
AT5G17680			disease resistance protein (TI...		Lus10011104 [exp]	13.2	0.8225
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10031472 [exp]	13.6	0.8566

Compare expression of checked genes

Lus10025687 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.