Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21730 932 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G12020 772 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G06670 745 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G39050 650 / 0 Kinesin motor family protein (.1) AT2G21380 640 / 0 Kinesin motor family protein (.1) AT3G10180 322 / 3e-92 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G59540 287 / 1e-82 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G51150 283 / 1e-79 ATP binding microtubule motor family protein (.1.2) AT5G66310 283 / 2e-79 ATP binding microtubule motor family protein (.1) AT1G18370 281 / 2e-79 HIK, ATNACK1 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018145 [exp] 1846 / 0 AT1G21730 1033 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016236 [exp] 735 / 0 AT3G12020 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10029307 [exp] 724 / 0 AT3G12020 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10017969 [exp] 647 / 0 AT4G39050 1517 / 0.0 Kinesin motor family protein (.1) Lus10041958 [exp] 642 / 0 AT4G39050 1202 / 0.0 Kinesin motor family protein (.1) Lus10017496 [exp] 494 / 2e-157 AT4G39050 1235 / 0.0 Kinesin motor family protein (.1) Lus10028790 [exp] 453 / 1e-140 AT4G39050 1242 / 0.0 Kinesin motor family protein (.1) Lus10010441 [exp] 324 / 3e-93 AT3G10180 1214 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10012103 [exp] 323 / 3e-92 AT3G10180 1271 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G081300 [exp] 1342 / 0 AT1G21730 1063 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G194900 [exp] 865 / 0 AT3G12020 1278 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.016G060400 [exp] 853 / 0 AT3G12020 1281 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G122100 [exp] 648 / 0 AT4G39050 1379 / 0.0 Kinesin motor family protein (.1) Potri.004G161100 [exp] 642 / 0 AT4G39050 1411 / 0.0 Kinesin motor family protein (.1) Potri.006G040700 [exp] 327 / 1e-93 AT3G10180 1336 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G136600 [exp] 291 / 3e-83 AT3G43210 1250 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) Potri.007G014800 [exp] 288 / 1e-81 AT5G66310 868 / 0.0 ATP binding microtubule motor family protein (.1) Potri.014G013300 [exp] 284 / 4e-81 AT1G59540 885 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G116900 [exp] 286 / 8e-81 AT3G51150 668 / 0.0 ATP binding microtubule motor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10025688 pacid=23145026 polypeptide=Lus10025688 locus=Lus10025688.g ID=Lus10025688.BGIv1.0 annot-version=v1.0 ATGTCGTCGTCAGCAGGGAGGTCGGTGCGGAGCTCAATCTCGCCGTTCCGCTCTAGGAAGTCTCCTGCGCAGCGTCCTCCGCCGTCGGCTCCGTCAGTGA CTAAGCACGGGGGGAGGGCGTCAACTCCTCCTTCGGCGAGCTCTTCTTCGTCTTCGTCTAGGCCTCCGTCGAGGTTTTCGAGTTCGACTACGGTGGTCAG TCAAGGTCCGGCTCCTGACCGAGTTGATGCTAGCAGGGCGAGGGAGAATGTGACGGTTACGGTTAGGTTTCGGCCTCTCAGTAATAGAGAACTTGGCAAG GGTGACGAGGTGGCTTGGTATGCAGATGGTGACTATACTGTGAAGAATGAGTATAATCCTTCGATTGCTTATGGTTTTGACAGAGTCTTTGGTTCCGCAA CGACAACTCGTCATGTATATGATATTGCTGCTCAGCATGTTGTGAGTAATGCGATGCAGGGTGTGAATGGTACAATTTTCGCTTATGGAGTTACTAGTAG TGGAAAGACTCACACAATGCATGGGGAGCAGAAATCACCTGGAGTAATTCCATTAGCAGTGAAGGATGTTTTTGGAATTATACAAGAGATGCCCGGAAGG GAATTTCTGCTTCGGGTTTCATATTTGGAAATCTACAATGAGGTAATCAATGATTTGCTTGACCCAACAGGACAAAACTTGAGAATACGAGAAGATCCAC AGGGAACTTATGTAGAAGGGATAAAAGAGGAAGTTGTCTTGTCACCAGCTCATGCCCTATCTTTGATAGCGACTGGTGAAGCACATAGGCACGTGGGCTC GAATAATATCAATATTCTAAGCAGCCGGAGCCACACTATATTCACTCTGACTATTGAAAGCAGCCCGAGTGACGAAAATCTTGGGGAAGAAGATGTCAGG CTTTCTCGATTGCACTTAATTGATCTTGCAGGATCTGAAAGTTCCAAGTCTGAAACTACTGGTATGCGCAGAAAAGAGGGATCATATATTAATAAAAGTC TGCTTACTCTTGGCACAGTTATTTCTAAATTGACGGATACAAAGGCGACCCATGTTCCATTCCGGGATTCAAAACTCACACGTTTATTGCAGTCATCACT CAGTGGACATGGAATGGTTTCTCTTATCTGCACTGTTACACCTGCTTCTAGCAATAGTGAAGAGACACACAACACACTGAAGTTTGCTCACCGTAGCAAG CATGTGGAGATTAAAGCCTTTCAGAATAAGATAATTGATGAGAAATCTCTCATAAAGAAGTATCAGAAAGAAATCTCTACTTTGAAGCAAGAACTTCAGG AGTTAAAGCGTGGAATGGTGGAGACCCCTCGTACTGCGTCTACTACTGAAGAAGATTTGGTACACTTGAAGCTGCAGCTTGAAGCTGGCCAGGTCAAATT GCAATCAAGACTTGAAGAAGAGGAACAAGCCAAAGAAGCTTTGATGGGAAGGATTCAACGACTAACTAAACTAATATTGGTTTCCACGAAGAATTCCATG CAACCAAGTGCTCCTGAAAGACCAAGTCACAGAAGAAGGCATTCTTTCGGGGAGGATGAGCTGGCATATTTACCAGATAGAAAACGTGAGTATATCATGG AGGACGATGCAGGAAGCTGTGCCTCTGAGCTTTCGGCGGATGGAAGGGATGATATAGGTAGCTTAGATGATTTGGTGAAGGATTACAGAAGAAGCAGGAG AAGGGGGATGCTTGGCTGGTTTAAACTGAAGAAACCTGAATACATGGTTGGATCATCACTAAGTGCTGATACTGAGAGCCTTGAGAGTGTGTCATCTGCA TCTGGTTCTAAATCGTCTCAGAACCGAGTAACATTTAGTGATGTGAAAGATGGACAAAGGAAATCTGTCGGTAGAAAGGCAGATGACATTATCGATTCAT TTCCAGAACGGACACAGGCAGGTGAACTCTTTAGTGCTACTGTTGGAGGACGTCACTTACCACCGACTGGTACCACAATCACAGATCAAATGGATCTGCT CAGAGAGCAGGTTAAAATGTTAGCTGGGGAGGTGGCATTTTCTACTAGCTCGTTGAAAAGATTGTTAGAGAAAGTATCTTCTCATCCCGAAGATTTAAAA CTTAAGGATCAAATGAAGAATCTGAAAGAGGAGATTAGTGAAAAGAGGCGTCAGATGCAAATTCTGGAACAGCGTATGCTTGGATCTATTGGAATGACTA CTCCTAACAGCAATGAAATGTCAGAGGCTTTATCCAACGTTACGACCCAGCTGAACGAAAAAATGTTCGAACTTGAGATTAAGTCAGCCGACAACAGAAT ACTTCAGGAGCAACTACAGCTGAAGGCATCAGAGAACACGGAGCTGCAAGAGACGATTCTTCTGCTGAGGCAACAGCTAAGTTCTTCATCAGACAGGGGT TCTAGCCTTCAACAGGATGCAGAATCGTATGATGAGAGTTATTTTGACGAAAGTACACCGAAAAGTGTCATGAGTATGAACAGAGCGTTTTCACACGATG AGTCACGGCTATGCAACAGCTCTCAGGCTACTGAAATTGAGAACCTGAAGCAGGAGAAGCTAAAGCTAATTGAAGAAAAAGAGCGACTTGATATTGAATG TCAGAAACTTGCGGAGGCAGCATCGTATGCAAAAGAACTAGCGGCAGCAGCAGCAGTTGAGCTCCGGAACCTAGCTGAAGAAGTGACAAAGCTTTCTTAT CAGAACTCTCAGCTTGCGACTGAGCTAAGCGATGCAAAAGAGGCGATTCGAAGATCAACCAGTTCTCGAGGCTCCCTTCCATTGGACTCGAAACAGAATA CCTCGAACTTACACAGATACGATAGTGGGCGCATTACTAGGAAAGCAGAGGATGGTGTTCTGATCGAAGAATTGCGGAAGGAATTAGCTGTAAGATGCCA AAGAGAAGCTTCCTTAGAAGCTGAACTTTCCGACAGAGGAAGAACAGAAGCTGAGCTACGAGAAAGACTCGACGAATCGAATCAGCACGAACAAGAGTTG GAGGATGAGCTTTCCAATATGTGGGTGCTGGTCTCAAAGCTGAGAAATTCTGCTCCGAAAGTTGAAGACAAAACAATAATCGGACGTGAAAATGGGTTCC CACTCTCAAATGGTCATTCCCACAACAGTACCAACGTCGATGCCACGAGCAACTCAGAAGTGTTAAAATCAAACCTCGAGAAAGAACGAAGACGATGCAA GGAACTAGAACGTCTAGTTTCGAAGCTAAAGGGAGAAGATATACAGAATCTTGATCCATCAGCACTCGACGAACTCCAGAATTTCCACCTTGGAGCCATA ACCAAAATCTGTCATGCAAAGGACTTTGGAAGTTTCTTGCAGTCGGAAGGTATCCATCCGATTCGATGCTTCTCGTTGTCGTAG
AA sequence Show only first row Show all	>Lus10025688 pacid=23145026 polypeptide=Lus10025688 locus=Lus10025688.g ID=Lus10025688.BGIv1.0 annot-version=v1.0 MSSSAGRSVRSSISPFRSRKSPAQRPPPSAPSVTKHGGRASTPPSASSSSSSSRPPSRFSSSTTVVSQGPAPDRVDASRARENVTVTVRFRPLSNRELGK GDEVAWYADGDYTVKNEYNPSIAYGFDRVFGSATTTRHVYDIAAQHVVSNAMQGVNGTIFAYGVTSSGKTHTMHGEQKSPGVIPLAVKDVFGIIQEMPGR EFLLRVSYLEIYNEVINDLLDPTGQNLRIREDPQGTYVEGIKEEVVLSPAHALSLIATGEAHRHVGSNNINILSSRSHTIFTLTIESSPSDENLGEEDVR LSRLHLIDLAGSESSKSETTGMRRKEGSYINKSLLTLGTVISKLTDTKATHVPFRDSKLTRLLQSSLSGHGMVSLICTVTPASSNSEETHNTLKFAHRSK HVEIKAFQNKIIDEKSLIKKYQKEISTLKQELQELKRGMVETPRTASTTEEDLVHLKLQLEAGQVKLQSRLEEEEQAKEALMGRIQRLTKLILVSTKNSM QPSAPERPSHRRRHSFGEDELAYLPDRKREYIMEDDAGSCASELSADGRDDIGSLDDLVKDYRRSRRRGMLGWFKLKKPEYMVGSSLSADTESLESVSSA SGSKSSQNRVTFSDVKDGQRKSVGRKADDIIDSFPERTQAGELFSATVGGRHLPPTGTTITDQMDLLREQVKMLAGEVAFSTSSLKRLLEKVSSHPEDLK LKDQMKNLKEEISEKRRQMQILEQRMLGSIGMTTPNSNEMSEALSNVTTQLNEKMFELEIKSADNRILQEQLQLKASENTELQETILLLRQQLSSSSDRG SSLQQDAESYDESYFDESTPKSVMSMNRAFSHDESRLCNSSQATEIENLKQEKLKLIEEKERLDIECQKLAEAASYAKELAAAAAVELRNLAEEVTKLSY QNSQLATELSDAKEAIRRSTSSRGSLPLDSKQNTSNLHRYDSGRITRKAEDGVLIEELRKELAVRCQREASLEAELSDRGRTEAELRERLDESNQHEQEL EDELSNMWVLVSKLRNSAPKVEDKTIIGRENGFPLSNGHSHNSTNVDATSNSEVLKSNLEKERRRCKELERLVSKLKGEDIQNLDPSALDELQNFHLGAI TKICHAKDFGSFLQSEGIHPIRCFSLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21730			P-loop containing nucleoside t...		Lus10025688 [exp]	0	1
AT2G26180		IQD6	IQ-domain 6 (.1)		Lus10014870 [exp]	3.9	0.9597
AT5G63960		EMB2780	DNA binding;nucleotide binding...		Lus10033513 [exp]	4.2	0.9524
AT2G04235			unknown protein		Lus10016054 [exp]	6.2	0.9576
AT5G48600		ATSMC4, SMC4, A...	ARABIDOPSIS THALIANA STRUCTURA...		Lus10005240 [exp]	6.8	0.9578
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10019042 [exp]	8.8	0.9382
AT1G69770		CMT3	chromomethylase 3 (.1)		Lus10026024 [exp]	9.6	0.9562
AT5G48450		SKS3	SKU5 similar 3 (.1)		Lus10025860 [exp]	11.0	0.9248
AT3G10180			P-loop containing nucleoside t...		Lus10012103 [exp]	12.3	0.9464
AT2G07170			ARM repeat superfamily protein...		Lus10027590 [exp]	12.4	0.9538
AT4G16970			Protein kinase superfamily pro...		Lus10004357 [exp]	13.0	0.9359

Compare expression of checked genes

Lus10025688 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.