Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47180 78 / 2e-17 RING/U-box superfamily protein (.1) AT3G19910 78 / 9e-17 RING/U-box superfamily protein (.1) AT3G63530 72 / 5e-15 BB2, BB BIG BROTHER, RING/U-box superfamily protein (.1.2) AT5G67120 66 / 1e-12 RING/U-box superfamily protein (.1) AT2G15530 64 / 1e-11 RING/U-box superfamily protein (.1.2.3.4) AT4G34040 63 / 3e-11 RING/U-box superfamily protein (.1) AT1G73760 61 / 8e-11 RING/U-box superfamily protein (.1) AT2G37150 60 / 3e-10 RING/U-box superfamily protein (.1.2.3) AT3G15070 59 / 5e-10 RING/U-box superfamily protein (.1.2) AT1G53190 56 / 6e-09 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018140 [exp] 238 / 1e-79 AT3G19910 104 / 2e-26 RING/U-box superfamily protein (.1) Lus10029693 [exp] 110 / 3e-29 AT3G19910 105 / 1e-26 RING/U-box superfamily protein (.1) Lus10010182 [exp] 77 / 2e-16 AT3G19910 298 / 2e-99 RING/U-box superfamily protein (.1) Lus10017385 [exp] 77 / 3e-16 AT3G19910 297 / 4e-99 RING/U-box superfamily protein (.1) Lus10019703 [exp] 76 / 3e-16 AT3G63530 285 / 1e-97 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10016416 [exp] 76 / 3e-16 AT3G63530 287 / 2e-98 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10031275 [exp] 66 / 5e-13 AT3G63530 174 / 4e-54 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10040389 [exp] 62 / 4e-11 AT2G37150 191 / 1e-53 RING/U-box superfamily protein (.1.2.3) Lus10031842 [exp] 58 / 4e-10 AT3G63530 160 / 1e-48 BIG BROTHER, RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G080900 [exp] 88 / 4e-21 AT3G47180 117 / 7e-33 RING/U-box superfamily protein (.1) Potri.005G180300 [exp] 84 / 1e-19 AT3G47180 117 / 1e-32 RING/U-box superfamily protein (.1) Potri.005G090800 [exp] 81 / 5e-18 AT3G19910 187 / 5e-57 RING/U-box superfamily protein (.1) Potri.007G073200 [exp] 78 / 7e-17 AT3G19910 303 / 3e-102 RING/U-box superfamily protein (.1) Potri.001G267700 [exp] 70 / 3e-14 AT3G63530 301 / 4e-104 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.003G204500 [exp] 69 / 5e-14 AT3G63530 175 / 2e-54 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.001G019600 [exp] 67 / 3e-13 AT3G63530 176 / 1e-54 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.009G062100 [exp] 64 / 6e-12 AT3G63530 269 / 4e-91 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.005G139900 [exp] 59 / 7e-10 AT4G34040 160 / 1e-41 RING/U-box superfamily protein (.1) Potri.009G100100 [exp] 58 / 9e-10 AT4G34040 392 / 5e-127 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10025691 pacid=23145130 polypeptide=Lus10025691 locus=Lus10025691.g ID=Lus10025691.BGIv1.0 annot-version=v1.0 ATGGATCACGACGACAATCAACCAACTAATTCAACGGCGAACGACGAAGTCGACGAACGGAGTAAAGCACCATTGGCGGTACTAAACCAAGTCCACTCCG ACCTGGCGCTCGCTATCGCCCTCCAAGAAGCTGACGAGGCTGCCACGCCAGCCAACGCCCCCTTCTTCGATGAAGATGAAGAAGGGGAAGAGGAATGGAG CGACAGCGAAACAGAGAGCGAGGTGGAGTACGCGGACGAGTACGAGTACGAGTTCTTCGAGAGCCAAGGTCAAGATGAAGAAATGGATGAGGAGGATGAG ATTGACCCGGACGACATGTCGTACGAGGATCTGGTCGCGTTAGGGGAGGTGGTCGGGGAGGAGAAGCGCGGGCTGACGGCGGAGGAGATTTCGGCGGCGG GGTGTTTGAGGAAGAGGAAGTTTGCTGAGGTGGCTGGTGACGTGGAGATGTGTGTGATTTGTCAGGCGGAGTATGAAGAAAAGGAAGAAGTGGTGGAACT TGTTGGGTGCGGGCATGCGTACCATAAGGAGTGTGTGACGAATTGGTTGTTGATTAGGAAGAATTGTCCTGTATGTGGGTATGAAGTTGACCCTCCGTCG ACGGTGACAGCGGTGACGACGGTGGTGGGTTGTAAGGAGTGTGGTAATTCCGGTGATGGAAATGGTGGGAATATCGCCGGTGGTTAG
AA sequence Show only first row Show all	>Lus10025691 pacid=23145130 polypeptide=Lus10025691 locus=Lus10025691.g ID=Lus10025691.BGIv1.0 annot-version=v1.0 MDHDDNQPTNSTANDEVDERSKAPLAVLNQVHSDLALAIALQEADEAATPANAPFFDEDEEGEEEWSDSETESEVEYADEYEYEFFESQGQDEEMDEEDE IDPDDMSYEDLVALGEVVGEEKRGLTAEEISAAGCLRKRKFAEVAGDVEMCVICQAEYEEKEEVVELVGCGHAYHKECVTNWLLIRKNCPVCGYEVDPPS TVTAVTTVVGCKECGNSGDGNGGNIAGG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19910			RING/U-box superfamily protein...		Lus10025691 [exp]	0	1
AT5G59340	HD	WOX2	WUSCHEL related homeobox 2 (.1...		Lus10016569 [exp]	5.5	0.8556
					Lus10000300 [exp]	13.1	0.8662
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10001025 [exp]	23.0	0.8565
AT1G15190			Fasciclin-like arabinogalactan...		Lus10003958 [exp]	31.1	0.8291
AT3G53630			unknown protein		Lus10025312 [exp]	46.6	0.8348
AT3G16350	MYB		Homeodomain-like superfamily p...		Lus10037560 [exp]	81.4	0.8123
AT1G80460		GLI1, NHO1	nonhost resistance to P. s. ph...		Lus10035914 [exp]	91.2	0.8094
AT4G11660	HSF	AT-HSFB2B, HSFB...	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10024508 [exp]	93.4	0.8134
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Lus10035175 [exp]	94.4	0.8126
AT2G04690			Pyridoxamine 5'-phosphate oxid...		Lus10039452 [exp]	126.5	0.7921

Compare expression of checked genes

Lus10025691 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.