Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38290 592 / 0 AMT2;1, ATAMT2 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) AT3G24300 63 / 3e-10 ATAMT1;3, AMT1;3 ammonium transporter 1;3 (.1) AT3G24290 61 / 1e-09 AMT1;5 ammonium transporter 1;5 (.1) AT4G13510 50 / 3e-06 ATAMT1;1, AMT1;1 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) AT1G64780 49 / 6e-06 ATAMT1;2 ammonium transporter 1;2 (.1) AT4G28700 45 / 0.0001 AMT1;4 ammonium transporter 1;4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024833 [exp] 550 / 0 AT2G38290 558 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10018748 [exp] 550 / 0 AT2G38290 557 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10024186 [exp] 550 / 0 AT2G38290 540 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10009928 [exp] 549 / 0 AT2G38290 539 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10014713 [exp] 540 / 0 AT2G38290 558 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10003093 [exp] 540 / 0 AT2G38290 558 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10001776 [exp] 507 / 1e-176 AT2G38290 503 / 3e-175 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10002208 [exp] 493 / 3e-172 AT2G38290 572 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10020248 [exp] 493 / 2e-171 AT2G38290 481 / 7e-167 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G305400 [exp] 759 / 0 AT2G38290 590 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.019G023022 [exp] 746 / 0 AT2G38290 572 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.019G000800 [exp] 734 / 0 AT2G38290 568 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.019G023012 [exp] 728 / 0 AT2G38290 567 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.006G102800 [exp] 639 / 0 AT2G38290 664 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.016G121400 [exp] 632 / 0 AT2G38290 648 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.018G033500 [exp] 527 / 0 AT2G38290 525 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.005G216000 [exp] 525 / 0 AT2G38290 528 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.002G047000 [exp] 521 / 0 AT2G38290 511 / 1e-179 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.013G040401 [exp] 497 / 1e-173 AT2G38290 471 / 1e-163 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00909 [flax] [poplar] Ammonium_transp Ammonium Transporter Family
Representative CDS sequence Show only first row Show all	>Lus10025692 pacid=23177525 polypeptide=Lus10025692 locus=Lus10025692.g ID=Lus10025692.BGIv1.0 annot-version=v1.0 ATGGAGGCACTAGCTCCTCCAAATGTAGTCCCAATAGCATACCAAGGTGGAACATCGGCGGCGGTTCCAGACTGGCTGAACAAAGGTGACAACGCATGGC AGATGATATCGGCGACCCTTGTGGGCCTACAAAGCGTGCCAGGGTTAGTAATCCTGTACGGTAGCATCGTCAAGAAGAAGTGGGCCGTGAACTCCGCGTT CATGGCCCTCTACGCCTTTGCAGCCGTTGTACTATGTTGGGCAGTATGGGGTTACAAGATGTCGTTCGGAGAAAAGCTTCTTCCTTTTTGGGGGAAAGCT GGGCCAGCCCTTGGTCAGAAGTTTATGACCAAGCAAGCGGCCCTCCCTGCAAGCACCCACTACTATGGAGACGGAATCACCGTTGAAACGGCGATGGTGA CCCCGTTTTATCCCATGGCGTCCATGGTTTGGTTCCAGTGCGTGTTCGCTGCCATAACGTTGATATTGCTGGCCGGGTCGGTGCTTGGGCGGATGAACTT CAAGGCATGGATGGCTTTCGTCCCACTTTGGCTCACCTTTTCGTATACCGTCGGTGCCTTCAGCCTATGGGGAGGTGGCTTTTTGTTTCAATGGGGTGTT ATCGATTATTCAGGCGGATATGTCATCCATCTGTCCTCTGGAATTGCCGGCTTCACCACTGCTTACTGGGTGGGGCCTAGATCAAAGAAGGATAGGGAGA GATTCCCTCCGAACAACGTGGTGCTAATGCTGGCCGGAGCAGGTCTTCTTTGGATGGGATGGGCCGGGTTCAACGGTGGAGACCCGTACACCGCAAACTT GGACTCCTCCGTTGCCGTCCTCAACACCAACATATGCGCCGCCACAAGCCTGCTAGTATGGACATGGCTTGATGTCATCTTCTTCCACAAGCCTTCCGTC ATTGGGGCCGTCCAGGGCATGATCACCGGCCTCGTCTGCATTACCCCCGCCGCCGGGGTGGTGGAAGGATGGGCAGCGATAGTAATGGGGATAGTATCAG GCAGCGTGCCATGGTTCACAATGATGATCGTACACAAAAGGTGGAGCTTCCTTGAGAAGATAGACGACACGCTAGGCGTATTCCACACTCACGCCGTAGC GGGCCTCCTTGGTGGGCTACTAACGGGCCTTTTAGCCGAGCCCACGCTTTGCTCTCTCTTCCTCCCCGTGACCAACTCCAGGGGAGCTTTCTACGGCGGC GGAGGAGGAGGAAGAATGCAGCTCGTGAAGCAGCTTGTCGGTGGTGGGTTCATCATCCTCTGGAACGCGGTTGTCACCTCCATCATTTGTTTCCTCATCA GCCTCGTAATCCCGCTCCGCATGTCTGAAGAACAACTCCTCGTCGGCGATGACGCCGTCCACGGCGAGGAAGCCTACGCGCTCTGGGGAGACGGGGAGTT GTACGACTCCACCAAGCATGGCGCTTTCTCTGACCTCGATGACGTTAACGCTACGGCAACTGGAGCTACCGAACAAGTTTGA
AA sequence Show only first row Show all	>Lus10025692 pacid=23177525 polypeptide=Lus10025692 locus=Lus10025692.g ID=Lus10025692.BGIv1.0 annot-version=v1.0 MEALAPPNVVPIAYQGGTSAAVPDWLNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVLCWAVWGYKMSFGEKLLPFWGKA GPALGQKFMTKQAALPASTHYYGDGITVETAMVTPFYPMASMVWFQCVFAAITLILLAGSVLGRMNFKAWMAFVPLWLTFSYTVGAFSLWGGGFLFQWGV IDYSGGYVIHLSSGIAGFTTAYWVGPRSKKDRERFPPNNVVLMLAGAGLLWMGWAGFNGGDPYTANLDSSVAVLNTNICAATSLLVWTWLDVIFFHKPSV IGAVQGMITGLVCITPAAGVVEGWAAIVMGIVSGSVPWFTMMIVHKRWSFLEKIDDTLGVFHTHAVAGLLGGLLTGLLAEPTLCSLFLPVTNSRGAFYGG GGGGRMQLVKQLVGGGFIILWNAVVTSIICFLISLVIPLRMSEEQLLVGDDAVHGEEAYALWGDGELYDSTKHGAFSDLDDVNATATGATEQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10025692 [exp]	0	1
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10013753 [exp]	1.0	0.9995
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10005238 [exp]	6.3	0.9723
AT4G08630			unknown protein		Lus10004138 [exp]	7.4	0.9254
AT2G15220			Plant basic secretory protein ...		Lus10001608 [exp]	8.8	0.9863
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10005144 [exp]	10.8	0.9863
					Lus10028570 [exp]	12.5	0.9863
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Lus10030693 [exp]	14.0	0.9863
AT5G40350	MYB	ATMYB24	myb domain protein 24 (.1)		Lus10032129 [exp]	15.3	0.9863
AT5G59540			2-oxoglutarate (2OG) and Fe(II...		Lus10033879 [exp]	16.5	0.9863
AT5G41761			unknown protein		Lus10017552 [exp]	17.7	0.9863

Compare expression of checked genes

Lus10025692 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.