Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21060 731 / 0 RBL RbBP5 LIKE, Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 57 / 1e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT2G01470 53 / 3e-07 ATSEC12, STL2P SEC12P-like 2 protein (.1) AT2G25420 52 / 6e-07 transducin family protein / WD-40 repeat family protein (.1) AT3G49660 50 / 1e-06 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G56130 50 / 2e-06 THO3, AtTEX1 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50650 47 / 2e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50550 47 / 2e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT1G10580 47 / 3e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 44 / 0.0003 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035969 [exp] 1078 / 0 AT3G21060 737 / 0.0 RbBP5 LIKE, Transducin/WD40 repeat-like superfamily protein (.1) Lus10002860 [exp] 53 / 4e-07 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 51 / 1e-06 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 48 / 1e-05 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 44 / 0.0002 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10001717 [exp] 44 / 0.0003 AT3G05090 1085 / 0.0 LATERAL ROOT STIMULATOR 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10003487 [exp] 43 / 0.0004 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10024972 [exp] 43 / 0.0008 AT5G67320 819 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Lus10021720 [exp] 43 / 0.0008 AT3G42660 1069 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G305500 [exp] 825 / 0 AT3G21060 757 / 0.0 RbBP5 LIKE, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G000900 [exp] 821 / 0 AT3G21060 741 / 0.0 RbBP5 LIKE, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 61 / 6e-10 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 57 / 9e-09 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 52 / 7e-07 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 49 / 6e-06 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G144400 [exp] 46 / 7e-05 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.019G087200 [exp] 44 / 0.0003 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.005G206600 [exp] 44 / 0.0004 AT5G08560 736 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.002G055800 [exp] 43 / 0.0005 AT5G08560 716 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10025693 pacid=23177596 polypeptide=Lus10025693 locus=Lus10025693.g ID=Lus10025693.BGIv1.0 annot-version=v1.0 ATGAACGCTCCGATTATTGATCCGTTGCAAGGAGATTTCCCTGAGGTAATAGAGGAGTATTTGGAGCATGGGGTTATGAAATGCATCGCCTTCAACCGCC GTGGAACTCTTCTTGCGGCTGGATGTGTTGATGGAAGTTGTGTCATTTGGGATTTTGAGACGAGGGGAATTGCCAAGGAGCTTCGGGATAAAGACTCTGT TGCACCTATAACATGTGTATGCTGGTCAAAATGTGGGCATCGGATCCTTGTGTCTGCTGCAGACAAATCGCTGACTCTTTGGGATGTTGTCTCTGGCGAG AAGATCACACGCACAGTACTGGAGCAAACATCACTATTGGCTCGTCTACATCCTGCTTCTTCTACCCCCTCGATGTGTTTGGTATGTCCACTCTCTTCTG CTCCTATGGTTGTTGATTTAGAAACGGGTACCACAACTGTACTTCCAGTGATAGTACAAGACATGGGCGATGATATTGCCCCTCCGCGAAATAAATCTTC AGATGCAACTCCTCATTTCACTCCAACTGCAGCATGCTATAACAAGTATGGTGACCTGATTTATGTTGGTAACTCCAAAGGAGAGATACTTATAATAGAT TATACAAGTGTTAAAGTTCACGCTGTGGTTCCTATTTCAACTGGTGCTGTAATCAAGAACATTGCGTTCAGCAGAAATGGGCAGTATCTTCTTACAAACT CGAACGATCGGATAATCAGGATATTTGAAAATCTTCTACCTCAAAAAGGTGGATTGATTGCCATAGAGGACCTGGTTAAGACGATTGAGGTTGAGGAGAG CATGGAGAAGCTAAAAGCTGTTGGATTAAAGTGTTTGGTACTTGTTCGGGAGTTTCAAGACACAATCACAAAGATGCACTGGAAAGCACCTTGTTTCAGT GGTGATGGAGATTGGGTGATCGCTGGTTCTGCAAGCAAAGGAGAGCATAAAATCTACATCTGGGATAAAGCTGGATATCTGGTTAAGATCCTTGAAGGTC CCAAAGAAGCATTGATTGATTTGGCATGGCATCCCATCCATCCGATTGTAGTCTCAGTCTCCTTAGCAGGATTTGTTTATATCTGGGCAAAGGACTACAC AGAGAACTGGAGTGCATTTGCTCCAGACTTCAAAGAGCTGGAGGAGAATGAAGAGTATGTGGAAAGAGAAGATGAATTTGACCTGATGCCTGATACTGAA AAGGTGAAAAAATCAGATGCAAATGAAGATGAAGAGGTTGATATTATGACCGTAGAGAAAGATGCATTCAGTGATTCCGATATGTCTGCGGAAGAATTGT GTTTCCTGCCAGCCATCCCATGTCCAGATACTCAGGAGCAACAGGACAAGTGTGCAGGAAGCTCTTCAAAGCTGGTAGAGAGTAATCATTCTGGATCTCC AATTTCTGAAGATGCTGGGCAGGACAGGCAAGCAGCAGATCATACATCAAGTCCTCATGAAGAGGACAGCAGTGCGGCGCGGTTGAAGAGAAGAAGAAAA CCTTCTGAGAAAGGTTTAGAGATGCAAGCAGAGAAGGTGAAGAAACCGGTCAAGGCATCAAAGACGAATAGTAGTAGTGGTAAAATGTCAAGACCGAGTA ACAAGAGTGTTGGTGGGGATGTAGTAGAAGCAAGCAATGGTGTAAATGGAGACTATGTATCAGATGAGTATCATTAG
AA sequence Show only first row Show all	>Lus10025693 pacid=23177596 polypeptide=Lus10025693 locus=Lus10025693.g ID=Lus10025693.BGIv1.0 annot-version=v1.0 MNAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCVDGSCVIWDFETRGIAKELRDKDSVAPITCVCWSKCGHRILVSAADKSLTLWDVVSGE KITRTVLEQTSLLARLHPASSTPSMCLVCPLSSAPMVVDLETGTTTVLPVIVQDMGDDIAPPRNKSSDATPHFTPTAACYNKYGDLIYVGNSKGEILIID YTSVKVHAVVPISTGAVIKNIAFSRNGQYLLTNSNDRIIRIFENLLPQKGGLIAIEDLVKTIEVEESMEKLKAVGLKCLVLVREFQDTITKMHWKAPCFS GDGDWVIAGSASKGEHKIYIWDKAGYLVKILEGPKEALIDLAWHPIHPIVVSVSLAGFVYIWAKDYTENWSAFAPDFKELEENEEYVEREDEFDLMPDTE KVKKSDANEDEEVDIMTVEKDAFSDSDMSAEELCFLPAIPCPDTQEQQDKCAGSSSKLVESNHSGSPISEDAGQDRQAADHTSSPHEEDSSAARLKRRRK PSEKGLEMQAEKVKKPVKASKTNSSSGKMSRPSNKSVGGDVVEASNGVNGDYVSDEYH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21060		RBL	RbBP5 LIKE, Transducin/WD40 re...		Lus10025693 [exp]	0	1
AT3G60830		ATARP7	actin-related protein 7 (.1)		Lus10029510 [exp]	4.2	0.9010
AT3G60830		ATARP7	actin-related protein 7 (.1)		Lus10039606 [exp]	4.5	0.9075
AT1G14850		NUP155	nucleoporin 155 (.1)		Lus10003701 [exp]	4.6	0.9167
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10026594 [exp]	7.1	0.9100
AT4G31580		SRZ22, RSZP22, ...	RS-containing zinc finger prot...		Lus10030858 [exp]	7.9	0.8719
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10021457 [exp]	8.5	0.8846
AT3G52890		KIPK	KCBP-interacting protein kinas...		Lus10008634 [exp]	8.7	0.8803
AT3G17830			Molecular chaperone Hsp40/DnaJ...		Lus10031336 [exp]	9.8	0.8794
AT5G55230		ATMAP65-1	microtubule-associated protein...		Lus10032567 [exp]	13.4	0.8933
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Lus10027632 [exp]	15.9	0.9096

Compare expression of checked genes

Lus10025693 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.