Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08650 976 / 0 Small GTP-binding protein (.1) AT5G39900 540 / 0 Small GTP-binding protein (.1) AT5G13650 115 / 1e-26 SVR3 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) AT2G31060 105 / 1e-23 EMB2785 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) AT3G22980 81 / 1e-15 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT2G45030 79 / 3e-15 Translation elongation factor EFG/EF2 protein (.1) AT1G45332 79 / 3e-15 Translation elongation factor EFG/EF2 protein (.1) AT1G06220 70 / 3e-12 GFA1, CLO, MEE5 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT1G56070 67 / 2e-11 LOS1, AT1G56075.1 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT5G25230 67 / 3e-11 Ribosomal protein S5/Elongation factor G/III/V family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035968 [exp] 1097 / 0 AT5G08650 1102 / 0.0 Small GTP-binding protein (.1) Lus10015364 [exp] 541 / 0 AT5G39900 1082 / 0.0 Small GTP-binding protein (.1) Lus10007250 [exp] 541 / 0 AT5G39900 1080 / 0.0 Small GTP-binding protein (.1) Lus10007535 [exp] 126 / 3e-30 AT5G13650 1121 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Lus10039896 [exp] 111 / 2e-25 AT2G31060 976 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) Lus10002179 [exp] 106 / 8e-24 AT2G31060 1036 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) Lus10012200 [exp] 105 / 1e-23 AT5G13650 1019 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Lus10039840 [exp] 79 / 4e-15 AT2G45030 1289 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Lus10018604 [exp] 79 / 4e-15 AT2G45030 1343 / 0.0 Translation elongation factor EFG/EF2 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G305300 [exp] 999 / 0 AT5G08650 1063 / 0.0 Small GTP-binding protein (.1) Potri.017G079800 [exp] 522 / 1e-179 AT5G39900 999 / 0.0 Small GTP-binding protein (.1) Potri.013G123700 [exp] 120 / 1e-28 AT2G31060 1084 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) Potri.006G053000 [exp] 112 / 1e-25 AT5G13650 1123 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Potri.001G123600 [exp] 79 / 3e-15 AT1G45332 1337 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Potri.003G109900 [exp] 79 / 4e-15 AT1G45332 1330 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Potri.009G152500 [exp] 74 / 2e-13 AT3G22980 1521 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.018G114900 [exp] 67 / 3e-11 AT1G06220 1710 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Potri.006G190600 [exp] 66 / 4e-11 AT1G06220 1744 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Potri.001G436300 [exp] 66 / 6e-11 AT1G17220 1076 / 0.0 fu-gaeri1, Translation initiation factor 2, small GTP-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06421 [flax] [poplar] LepA_C GTP-binding protein LepA C-terminus CL0575 [flax] [poplar] EFTPs PF03144 [flax] [poplar] GTP_EFTU_D2 Elongation factor Tu domain 2 CL0437 [flax] [poplar] EF-G_C PF00679 [flax] [poplar] EFG_C Elongation factor G C-terminus CL0023 [flax] [poplar] P-loop_NTPase PF00009 [flax] [poplar] GTP_EFTU Elongation factor Tu GTP binding domain
Representative CDS sequence Show only first row Show all	>Lus10025694 pacid=23177614 polypeptide=Lus10025694 locus=Lus10025694.g ID=Lus10025694.BGIv1.0 annot-version=v1.0 ATGAAGGAGCAGTTCCTTGATAATATGGATTTGGAGAGAGAGCGAGGCATCACTATCAAGCTTCAGGCTGCTCGAATGCGTTACATATATGACAATCAAC CCTATTGCCTCAATTTGATTGACACTCCTGGACATGTCGACTTCTCCTACGAGGTTTCTCGTTCTCTTGCTGCTTGTGAAGGTGCTTTGCTTGTTGTTGA TGCTTCTCAGGGAGTGGAAGCGCAAACATTGGCTAATGTTTATTTGGCCTTGGAGAACAATCTAGAAATCATTCCTGTCTTGAATAAAATTGATCTGCCA GGTGCTGAACCAGATCGTGTTATCCAAGAGATTGAAGAGGTTATTGGTTTAGATTGCAGCAACGCAATTCTCTGCTCTGCGAAGGAGGGAATTGGTATAA CAGACATTCTGACTGCAATTGTGAAAAGAATCCCTCCTCCAACTGATACTTCTCAAAACCCTTTGCGGGCTCTAATATTTGATAGTTACTATGATCCATA TCGTGGTGTTATCGTGTACTTTCGAGTAATAGATGGAAAAATAAAGAAAGGGGACAGGATTTATTTTATGGCCAGCAAAAAGGATTATTACGTTGACGAA ATAGGAGTTCTATCACCAAATCAGCTAGAAGTGGATGAACTATATGCGGGTGAGGTTGGTTATCTGTCAGCTTCTATAAGATCTGTCGCAGATGCTAGGG TTGGTGACACCGTTTCCAACTTCAGTAGAAAGGCAGAGACGTCGCTTCCTGGATACGAAGAGGTTACTCCAATGGTGTTCTGTGGACTGTTTCCTGTTGA TGCTGACCAATTTCCTGAACTACGTGATGCGCTGGAAAAACTACAGCTAAATGATGCTGCACTCAAGTTCGAGCCTGAATCATCAAGTGCCATGGGTTTT GGCTTTAGGTGTGGTTTCTTGGGGCTTCTCCACATGGAAATTGTTCAGGAAAGACTCGAGAGGGAATACAATCTCAGCTTAATAACTACTGCTCCTAGTG TGGTATATAAAGTGAACTGCATAACCGGTGATACTGTTGAGTGCTCAAATCCTTCTTTGCTTCCTGATCCCCGGAAGTCAATTGAGGAGCCTTTTGTTAA GATTGAAATGCTCACACCAAAGGACTATATTGGTTCACTTATGGAGCTTGCTCAAGAAAGACGCGGAGAATTCAAAGAAATGAAGTATATCACTGAGATT AGGGCATCACTCACATATGAGTTGCCCTTAGCTGAGATGGTGGGTGACTTTTTTGATCAGCTTAAATCCAGAAGTAAAGGATATGCGAGCATGGAGTACA CTTTCACTGGGTACAAGGAAAGTGATCTGGTAAAGCTAGACGTCCACATCAATGGTGACCCTGTTGAACCATTGGCCACCATTGTGCACAAAGATAAGGC GTATCCTGTTGGAAGAGCGTTGACCCAAAAGCTGAAAGAGCTTATACCCCGACAAATGTTCAAAATACCTATTCAAGCATGCATTGGCTCGAAAGTAATA GCAAGCGAGGCATTATCAGCGATCAGGAAGGATGTGTTAGCCAAATGTTACGGAGGAGATATTACGAGGAAAAAGAAATTGCTTAAGAAACAGGCCGAAG GGAAGAAAAGGATGAAGTCGATTGGGAAAGTGGACGTGCCTCAAGAAGCATTCATGGCTGTTTTGAAACTTGAAAAGGAAGTGCTCTGA
AA sequence Show only first row Show all	>Lus10025694 pacid=23177614 polypeptide=Lus10025694 locus=Lus10025694.g ID=Lus10025694.BGIv1.0 annot-version=v1.0 MKEQFLDNMDLERERGITIKLQAARMRYIYDNQPYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLP GAEPDRVIQEIEEVIGLDCSNAILCSAKEGIGITDILTAIVKRIPPPTDTSQNPLRALIFDSYYDPYRGVIVYFRVIDGKIKKGDRIYFMASKKDYYVDE IGVLSPNQLEVDELYAGEVGYLSASIRSVADARVGDTVSNFSRKAETSLPGYEEVTPMVFCGLFPVDADQFPELRDALEKLQLNDAALKFEPESSSAMGF GFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVVYKVNCITGDTVECSNPSLLPDPRKSIEEPFVKIEMLTPKDYIGSLMELAQERRGEFKEMKYITEI RASLTYELPLAEMVGDFFDQLKSRSKGYASMEYTFTGYKESDLVKLDVHINGDPVEPLATIVHKDKAYPVGRALTQKLKELIPRQMFKIPIQACIGSKVI ASEALSAIRKDVLAKCYGGDITRKKKLLKKQAEGKKRMKSIGKVDVPQEAFMAVLKLEKEVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08650			Small GTP-binding protein (.1)		Lus10025694 [exp]	0	1
AT4G05090			Inositol monophosphatase famil...		Lus10007817 [exp]	1.0	0.9347
AT5G08650			Small GTP-binding protein (.1)		Lus10035968 [exp]	2.0	0.9294
AT1G49380			cytochrome c biogenesis protei...		Lus10040510 [exp]	5.9	0.9163
AT1G03160		FZL	FZO-like (.1.2)		Lus10014666 [exp]	6.9	0.9276
AT1G32080		AtLrgB	membrane protein, putative (.1...		Lus10012137 [exp]	7.7	0.9129
AT4G01800		AtcpSecA, AGY1,...	Arabidopsis thaliana chloropla...		Lus10038031 [exp]	7.9	0.9092
AT4G01800		AtcpSecA, AGY1,...	Arabidopsis thaliana chloropla...		Lus10009973 [exp]	8.0	0.9195
AT3G23070		ATCFM3A	CRM family member 3A (.1)		Lus10022091 [exp]	8.5	0.8997
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Lus10042381 [exp]	9.4	0.8789
AT5G42310			Pentatricopeptide repeat (PPR-...		Lus10016009 [exp]	9.7	0.8809

Compare expression of checked genes

Lus10025694 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.