Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31020 820 / 0 ORP1A OSBP(oxysterol binding protein)-related protein 1A (.1) AT4G08180 813 / 0 ORP1C OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) AT1G13170 728 / 0 ORP1D OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) AT2G31030 607 / 0 ORP1B OSBP(oxysterol binding protein)-related protein 1B (.1) AT4G22540 571 / 0 ORP2A OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) AT4G12460 557 / 0 ORP2B OSBP(oxysterol binding protein)-related protein 2B (.1), OSBP(oxysterol binding protein)-related protein 2B (.2) AT1G77730 181 / 2e-51 Pleckstrin homology (PH) domain superfamily protein (.1) AT3G09300 169 / 3e-45 ORP3B OSBP(oxysterol binding protein)-related protein 3B (.1) AT5G02100 162 / 7e-43 UNE18, ORP3A UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1) AT5G59420 160 / 4e-42 ORP3C OSBP(oxysterol binding protein)-related protein 3C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035967 [exp] 1266 / 0 AT4G08180 803 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10028087 [exp] 841 / 0 AT4G08180 1147 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10025635 [exp] 833 / 0 AT4G08180 1142 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10036949 [exp] 714 / 0 AT1G13170 1241 / 0.0 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Lus10024613 [exp] 670 / 0 AT4G22540 1065 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Lus10032251 [exp] 581 / 0 AT4G22540 979 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Lus10006237 [exp] 556 / 0 AT1G13170 1219 / 0.0 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Lus10024386 [exp] 167 / 2e-44 AT5G02100 771 / 0.0 UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1) Lus10010843 [exp] 164 / 2e-43 AT5G02100 771 / 0.0 UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G088000 [exp] 840 / 0 AT4G08180 1144 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.005G172900 [exp] 838 / 0 AT4G08180 1158 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.010G051400 [exp] 728 / 0 AT1G13170 1211 / 0.0 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Potri.019G015111 [exp] 608 / 0 AT4G08180 889 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.001G121700 [exp] 585 / 0 AT4G22540 1109 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Potri.003G111600 [exp] 584 / 0 AT4G22540 1100 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Potri.008G182766 [exp] 237 / 2e-71 AT1G13170 471 / 2e-161 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Potri.006G086400 [exp] 160 / 3e-42 AT3G09300 764 / 0.0 OSBP(oxysterol binding protein)-related protein 3B (.1) Potri.018G143600 [exp] 69 / 4e-12 AT4G25850 412 / 2e-143 OSBP(oxysterol binding protein)-related protein 4B (.1), OSBP(oxysterol binding protein)-related protein 4B (.2) Potri.006G076400 [exp] 61 / 1e-09 AT5G57240 392 / 9e-136 OSBP(oxysterol binding protein)-related protein 4C (.1), OSBP(oxysterol binding protein)-related protein 4C (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01237 [flax] [poplar] Oxysterol_BP Oxysterol-binding protein CL0266 [flax] [poplar] PH PF00169 [flax] [poplar] PH PH domain
Representative CDS sequence Show only first row Show all	>Lus10025695 pacid=23177678 polypeptide=Lus10025695 locus=Lus10025695.g ID=Lus10025695.BGIv1.0 annot-version=v1.0 ATGCAAGATCAGCAACAGATCCCATTGATGCAGCTTCTCGATCACGACAACCACTCTCCACACTACATTCCGATGGCATCTTTCCGCTCCTTGGATCATA GTCGATCCGCCAACAGCTTCCGCCCCCACCGCGATGATCAATCTAACAATAATAATAACAACTACCACAATAATAATTATAATATAAATAACCGTCGCTC TCTGGATTACAAGTCCGCTTCCATGTACAGCATTAGGGATCAGGACGTGGATTACGGTGGTTCTGTTACAACAGCGTCAGGGGTGGTGTCAGGTATATTG CACAAGTGGGTGAATTACGGGAGGGGATGGCGGCCTAGGTGGTTCATTCTCCAGGACGGTGTCTTGTCTTATTATAAGATCCACGGCAAAGGCCAACACA ACATCACTCTCAACCGCCATGCTCTCAACAAGCTGTCCTCCTCTGCCTCTTCGTCATTCACCGCCTCCACCAAAGTCGTCGGCGAGCAGTCCGTCCGTTG GATCTCCCGCCAAACCCGATCTATTTCCGAGCCCCGCCGCTTCTGTCACCCCGTCGGCGAAGTCCACCTCAAGGTTTCAACGATACGGGAGAGTCAATCG GACGACAGGCGGTTCTCAGTGTACACGGGGACATCAAAGCGGCTTCACTTGAGGGCAGAGAGCCCTGAAGACAGGAGAGCTTGGATGGAGGCGCTCAAGG CCGTGAAGGACATGTTCCCTAGGACCGCCATCTCAGACGATGCCGCCGGAACTACTGTCGTCCCCTTTCCGACGGAGAGGCTGAGGCAGAGATTAGCAGA GGAAGGTGTAAGTGAAGAAGCCATACAAGAGAGTGAAGCAATCATGAGGAATGAAATTTCGGCTCTTACTGAACATGTCCATATCCTCAACCAGAAGCAG GTAGAGAAAGTGGATTTGGAGCACACTGTTGTTAACGAAAGCAGAAACATTTCCAAGAAACACACAGTCAAATTAAACGGAAGTGACTCAGACGATGAAA GAAACGAGGGCAGAGAAGAAGATCAGCAAACAGAGGAGGATGATGAAGAGGACGAATTTTTTGATACCCGAGATTTTCTTCCATGGACGGGGTCCTTTAG TAGTAGTCATGACGACGGTGACTTACAGTCAATGCAGTCAGATAATGATGATTCCTCGGACGAATCGGGCGGTGGTATGAATAATAATAAGTATCCGTAC GTGAAAAGGCGAAAGAAGTTGCCGGAGCCGGCTGAGAAGGAGAAGGCAGTTAGCTTGTGGTCGATGATCAAAGACAACATAGGGAAGGATTTGGGGAAGA TATGTCTGCCAGTGTATTTCAACGAGCCAATTTCTTCTCTTCAGAAGTGTTTCGAAGATCTTGAGTACTCCTACTTATTGGATCGAGCTAATGAATGGGG TAAGAGGGACGATGGCCTAATGAGGTTACTAAATGTGGCGGCATTTGCAGTATCAGGGTATGCTTCCACTAACGGGAGATTGTGTAAGCCGTTCAACCCA TTGTTGGGTGAGACGTACGAAGCCGATTTTCCAGATAAAGGTGTACGATTTATTTCTGAAAAGGTAAGCCATCATCCAATGGTGGTGGCGTGCCATTGTG AAGGTGAAGGTTGGAAGATGTGGGGGGACAGTAATTTGAAAAGCAAGTTTTGGGGGAGGTCGATTCAGATAGACCCTGTTGGCGTATTGTCGTTGGAGTT TGACGATGGAGAAGTTTACCACTGGAGCAAGGTAACAACGTCGATTTACAACCTGATACTGGGGAAAATATACTGCGACCACCACGGGACAATGAAAATA GAAGGGAATGGGAAATATAGTTGCAAGCTCAAGTTCAAGGAGCACTCCATCATGGATAGGAATCCTCACCAGGTTCAAGGGATTGTTGAAGAGAAGAGCA GTGGTAAAACTGTGGCGACGTTGTTAGGGAAATGGGACGACAGTATGCACTACATCGTCAAAGCAGCTGCAGGAGGAGGTCAGAAGAGTAGTAAGGGATC ATCAGAGCCACAGCTGCTCTGGAAGAGAAGCAAACCGGCCCAGTTTCCCACCAGATACAATTTGACGCGCTTCGCTATCACCCTCAATGAGCTCACTCCT GGACTTCAGGGGAAATTGCCGCCAACAGATTCAAGACTGAGACCTGATCAGAGATGTTTGGAAAAGGGACAATATGAGATGGCCGACGTTGAGAAGTTGC GACTAGAGCAAAGGCAACGACAGGCGAGGAAGATGCAAGAAAGCGGGTGGAAGCCAAGGTGGTTTGCAAAGGAGAAATTAGAGAATAGTAAGAACGACAC ATATCGATACAGTGGTGGTTATTGGGAGGCCAGGGAGAATGGAACATGGGATTCATGTCCCGCCATTTTTGGCTAA
AA sequence Show only first row Show all	>Lus10025695 pacid=23177678 polypeptide=Lus10025695 locus=Lus10025695.g ID=Lus10025695.BGIv1.0 annot-version=v1.0 MQDQQQIPLMQLLDHDNHSPHYIPMASFRSLDHSRSANSFRPHRDDQSNNNNNNYHNNNYNINNRRSLDYKSASMYSIRDQDVDYGGSVTTASGVVSGIL HKWVNYGRGWRPRWFILQDGVLSYYKIHGKGQHNITLNRHALNKLSSSASSSFTASTKVVGEQSVRWISRQTRSISEPRRFCHPVGEVHLKVSTIRESQS DDRRFSVYTGTSKRLHLRAESPEDRRAWMEALKAVKDMFPRTAISDDAAGTTVVPFPTERLRQRLAEEGVSEEAIQESEAIMRNEISALTEHVHILNQKQ VEKVDLEHTVVNESRNISKKHTVKLNGSDSDDERNEGREEDQQTEEDDEEDEFFDTRDFLPWTGSFSSSHDDGDLQSMQSDNDDSSDESGGGMNNNKYPY VKRRKKLPEPAEKEKAVSLWSMIKDNIGKDLGKICLPVYFNEPISSLQKCFEDLEYSYLLDRANEWGKRDDGLMRLLNVAAFAVSGYASTNGRLCKPFNP LLGETYEADFPDKGVRFISEKVSHHPMVVACHCEGEGWKMWGDSNLKSKFWGRSIQIDPVGVLSLEFDDGEVYHWSKVTTSIYNLILGKIYCDHHGTMKI EGNGKYSCKLKFKEHSIMDRNPHQVQGIVEEKSSGKTVATLLGKWDDSMHYIVKAAAGGGQKSSKGSSEPQLLWKRSKPAQFPTRYNLTRFAITLNELTP GLQGKLPPTDSRLRPDQRCLEKGQYEMADVEKLRLEQRQRQARKMQESGWKPRWFAKEKLENSKNDTYRYSGGYWEARENGTWDSCPAIFG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10025695 [exp]	0	1
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Lus10005284 [exp]	1.4	0.8266
					Lus10010248 [exp]	2.4	0.8214
AT1G80320			2-oxoglutarate (2OG) and Fe(II...		Lus10041279 [exp]	2.8	0.8624
AT5G12390		FIS1B	FISSION 1B, Tetratricopeptide ...		Lus10009707 [exp]	11.5	0.7609
AT2G15220			Plant basic secretory protein ...		Lus10014107 [exp]	25.2	0.7390
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10033336 [exp]	29.1	0.8086
AT5G49950			alpha/beta-Hydrolases superfam...		Lus10035807 [exp]	31.6	0.8035
AT3G47570			Leucine-rich repeat protein ki...		Lus10031043 [exp]	31.7	0.7671
AT1G68630			PLAC8 family protein (.1)		Lus10008890 [exp]	32.4	0.7425
AT3G07120			RING/U-box superfamily protein...		Lus10025921 [exp]	53.2	0.7464

Compare expression of checked genes

Lus10025695 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.