Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58220 342 / 3e-116 ALNS, TTL allantoin synthase, transthyretin-like protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035966 [exp] 545 / 0 AT5G58220 369 / 6e-128 allantoin synthase, transthyretin-like protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G238300 [exp] 445 / 5e-157 AT5G58220 360 / 1e-124 allantoin synthase, transthyretin-like protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09349 [flax] [poplar] OHCU_decarbox OHCU decarboxylase CL0287 [flax] [poplar] Transthyretin PF00576 [flax] [poplar] Transthyretin HIUase/Transthyretin family
Representative CDS sequence Show only first row Show all	>Lus10025696 pacid=23177536 polypeptide=Lus10025696 locus=Lus10025696.g ID=Lus10025696.BGIv1.0 annot-version=v1.0 ATGTCCAGTCGTCCTCGTTCCCTCAACATCAACAGCCAGTCAGCCTCGAACGACTGGTCAGCCACACTGATGCTCGAGTCCCGGCCAGCTGAGGTCCTAA CCTTCCTCGGCGGTAGCGAGAAAGCCGGAAGCGAGACCTTCTGCTTGCTGAATCAAAATACGCCAAGGATAACCAGTAGATCGGGCGGCAGATTGAGGAA GAGAAAGGAGGAGAAAAGGCAGATTAAGCTTAGCAATAATATGAATTTTGAGGAGAAGGATTGGCTAGCATGTTGTGGCAGCACCAGATTCGCCAAGGAG ATGGCTTCAGCGTCCCCCTTCTCATCGCTCGATCACGCCATCTCTACGGCCAGAGATATCTGGTTCAATAAGGTGGATGTCAATGGCTGGCTAGAAGCTT TCGCCGCTCATCCTCAGATCGGCCAGTCTTCATCTGCCGCAGCTTCCCATACTGCTTCTGAATGGAGCAAGGGAGAGCAGTCAACAGCAATATCCACTGC AACTATTTCCACCTTACAGGAACTGGCTGACTGGAACGCTCAGTACAGGCAAAAGTTTGGATTCATTTTTCTTATATTTGCATCTGGCCGGAGTTCTGCT GAAATTCTTCTTCAACTCAAGAAACGGTATGAAAACCGGCCTATAGTAGAGTTTGAGATCGCTGCTCAGGAGCAAATGAAGGTAACAGAGCTACGACTTG CAAAGCTCTTCTCAACGAGAACCAGATCTGTCGTAACAGAAGACCGTTTGGACATTATCGGAGGGCATCTAACTGCTACTACCGACTCTTCATCTGGAAA GCCATCTGAAGTTCCAACACGGACCCGTCCACCCATCACAACACATATCTTGGATGTATCGAGAGGGTTGCCAGCGGCTGATGTTGAGGTGGTTTTGGAA ATGTGGCAGGGCAGTCAAGCTCGTCCCTCGTTCCTCAAAACAGATGTGGGCGAGTGGGTGTATCAAGGGTCTTCAACTACCAATGCAGATGGAAGGTCTG GGGAGTTGATGAGCATAGTTGATGCCGTGAACCCGGGAATATACAGAATAAGTTTCAACACAGGCAAATTCAATCCGACTGGGTTCTTTCCATACGTGTC TATCGTGTTTGAAATCAAGGAGTGCCAGAAGTTGGAGCACTTTCATGTTCCTTTGCTGCTGTCTCCCTTCTCGTTTTCTACTTATCGCGGGAGCTAG
AA sequence Show only first row Show all	>Lus10025696 pacid=23177536 polypeptide=Lus10025696 locus=Lus10025696.g ID=Lus10025696.BGIv1.0 annot-version=v1.0 MSSRPRSLNINSQSASNDWSATLMLESRPAEVLTFLGGSEKAGSETFCLLNQNTPRITSRSGGRLRKRKEEKRQIKLSNNMNFEEKDWLACCGSTRFAKE MASASPFSSLDHAISTARDIWFNKVDVNGWLEAFAAHPQIGQSSSAAASHTASEWSKGEQSTAISTATISTLQELADWNAQYRQKFGFIFLIFASGRSSA EILLQLKKRYENRPIVEFEIAAQEQMKVTELRLAKLFSTRTRSVVTEDRLDIIGGHLTATTDSSSGKPSEVPTRTRPPITTHILDVSRGLPAADVEVVLE MWQGSQARPSFLKTDVGEWVYQGSSTTNADGRSGELMSIVDAVNPGIYRISFNTGKFNPTGFFPYVSIVFEIKECQKLEHFHVPLLLSPFSFSTYRGS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58220		ALNS, TTL	allantoin synthase, transthyre...		Lus10025696 [exp]	0	1
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10032274 [exp]	1.0	0.9584
AT1G54100		ALDH7B4	aldehyde dehydrogenase 7B4 (.1...		Lus10013155 [exp]	3.2	0.9541
AT1G55680			Transducin/WD40 repeat-like su...		Lus10035667 [exp]	4.6	0.9468
AT5G16800			Acyl-CoA N-acyltransferases (N...		Lus10041016 [exp]	5.9	0.9343
AT5G48020			2-oxoglutarate (2OG) and Fe(II...		Lus10015707 [exp]	6.9	0.9149
AT5G46180		DELTA-OAT	ornithine-delta-aminotransfera...		Lus10038510 [exp]	6.9	0.9353
AT3G18620			DHHC-type zinc finger family p...		Lus10013426 [exp]	7.4	0.9401
AT1G72710		CKL2	casein kinase 1-like protein 2...		Lus10037621 [exp]	7.5	0.9329
AT1G02305			Cysteine proteinases superfami...		Lus10007212 [exp]	8.2	0.9403
AT3G56320			PAP/OAS1 substrate-binding dom...		Lus10029045 [exp]	11.8	0.9252

Compare expression of checked genes

Lus10025696 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.