Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52950 717 / 0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) AT2G36500 650 / 0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT5G50530 499 / 1e-172 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT5G50640 499 / 1e-172 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT5G63490 474 / 6e-163 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT1G47271 52 / 2e-07 Cystathionine beta-synthase (CBS) family protein (.1) AT5G10860 49 / 3e-06 CBSX3 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) AT4G34120 42 / 0.0004 CBSX2, CDCP1, LEJ1 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035965 [exp] 1026 / 0 AT3G52950 714 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Lus10032625 [exp] 511 / 3e-177 AT5G50530 721 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) Lus10043123 [exp] 503 / 3e-174 AT5G50530 714 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) Lus10019117 [exp] 48 / 5e-06 AT5G10860 347 / 2e-123 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Lus10034441 [exp] 45 / 0.0001 AT5G10860 350 / 4e-120 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Lus10021675 [exp] 44 / 0.0001 AT5G10860 338 / 7e-120 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Lus10035014 [exp] 44 / 0.0001 AT5G10860 341 / 5e-121 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Lus10001964 [exp] 44 / 0.0002 AT1G47271 202 / 5e-66 Cystathionine beta-synthase (CBS) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G098400 [exp] 758 / 0 AT3G52950 728 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Potri.005G070500 [exp] 739 / 0 AT3G52950 750 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Potri.012G099600 [exp] 538 / 0 AT5G50530 639 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) Potri.015G098100 [exp] 506 / 1e-175 AT5G50530 628 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) Potri.013G161500 [exp] 52 / 3e-07 AT5G10860 343 / 8e-122 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Potri.005G228300 [exp] 50 / 1e-06 AT1G47271 251 / 1e-85 Cystathionine beta-synthase (CBS) family protein (.1) Potri.017G000100 [exp] 49 / 2e-06 AT5G10860 339 / 2e-120 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Potri.001G303900 [exp] 43 / 0.0003 AT4G34120 267 / 1e-90 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10025698 pacid=23177570 polypeptide=Lus10025698 locus=Lus10025698.g ID=Lus10025698.BGIv1.0 annot-version=v1.0 ATGAGCAGTCATGGCATCCCTCCTCCTCCGCCTCGGCGGAGCACTGTGAACCAGAAGCAGCGAGGTCCATCGGCCTCCTCCAAGAAATCCTCCATCGCGG TTTCCGAAAATGGAAGCGCCAATGGAACCTCCCCCAAGCCATCCTCTCCTTCGTCTGGTGGCGGGGAGAGGACTGTGAAGAAATTGAGGCTCTCTAAAGC TCTTACCATTCCGGAAGGTACCACCGTCTCCGATGCCTGTCGAAGGATGGCAGCCCGCCGGGTCACTGCTGTTCTGCTTACCGATGCTAATGCTCTGCTT TCGGGAATTTGCACTGACAAGGATATTGCTGCTAGAGTAATAGCAGAAGGTTTGAGACCCGACCAGACGATTGTGTCGAAGATCATGACGAGAAATCCTA TTTTTGTTGCATCAGATGCTTTAGCAATTGAAGCTCTTCAAAAGATGGTCCAGGGAAAGTTCAGGCATCTTCCTGTTGTAGAGAATGGTGAAGTTATTGC TTTATTGGACATTACGAAGTGTCTCTATGATGCTATTGCAAGGATGGAAAAAGCTGCTGAGCAGGGAAGTTCAATTGCTACAGCTGTTGAAGGGATGGAA CGTCAATTGGGCCACAATGCATCTGCTCAATATTCATTTATAGAGACTCTGAGGGAGAGGATGTTCAAACCTTCCTTATCGACTATCATTGGTGACGAGA AGGTTGCAATTGCAGCACCATCAGATCCTGTCTCTGTTGCTGCTAAAAAGATGAGAGATTTGAAGGTTAATTCTGCTATTGTGTCGACTGGGAATAAAAT TCTGGGGATACTAACCTCAAAGGATATCCTCATGCGGGTTGTTGCTCTAAATCTTTCTCCTGAGTTGACTTTGGCTGAAAAGGTGATGACTCCAAACCCT GAGTGTGCTACACTGGAGACCACAATCCTCGATGCATTGCATATAATGCATGATGGAAAATTTTTACATCTCCCTGTAGTGGATAAAGATAGAACAGTTG TTGGATGCCTGGACGTTCTGCAGATAACGCATGCTGCAATTTCCATGGTTGAAAGCAACTCTGGAGCTGTCAATGACATGGCAAGCTCAATGATGCAAAA GTTTTGGGATTCTGCCCTTGCTTTAGAGCCACCAGATGATTTTGACACACAAAGTGAAATGTCCGTTATGATGACATCTGATGTTCCTGAACTTGGGAAG TCCATTCCATCTCTCGTTCATGGAAATGCCTTCTCTTTCAAATTTGTTGACCTGAAAGGTCGAATTCATAGAATTAATTGCGGTACTGAAAAATTAGAAG AACTTGTATCTGCTGTCTTGGATAGAATTGGTGCAACCGGCGAGCATCACCCTCAGCTTTTGTACGAAGATGATGAAGGTGACAAGGTTTTACTTGCTAC CGATTCTGATCTAATAGGTGCTGTCGGTCATGCTAGATGTTCAGGTTTGAAGGTCTTGAGACTGCATCTAGACTTGCCCGAATCAAGCGATGAGAAGACA AAGGCAGAGTTTGATACCACCACAGTGGAGAGAAGTCAGTGGAGGTCGTACCAGTTTGGCATCGTAGCTGGTGCCGTGGCTTTGACAGGGATTGGCCTGG TAGTGTACCTGAAACGAACCCAGTGA
AA sequence Show only first row Show all	>Lus10025698 pacid=23177570 polypeptide=Lus10025698 locus=Lus10025698.g ID=Lus10025698.BGIv1.0 annot-version=v1.0 MSSHGIPPPPPRRSTVNQKQRGPSASSKKSSIAVSENGSANGTSPKPSSPSSGGGERTVKKLRLSKALTIPEGTTVSDACRRMAARRVTAVLLTDANALL SGICTDKDIAARVIAEGLRPDQTIVSKIMTRNPIFVASDALAIEALQKMVQGKFRHLPVVENGEVIALLDITKCLYDAIARMEKAAEQGSSIATAVEGME RQLGHNASAQYSFIETLRERMFKPSLSTIIGDEKVAIAAPSDPVSVAAKKMRDLKVNSAIVSTGNKILGILTSKDILMRVVALNLSPELTLAEKVMTPNP ECATLETTILDALHIMHDGKFLHLPVVDKDRTVVGCLDVLQITHAAISMVESNSGAVNDMASSMMQKFWDSALALEPPDDFDTQSEMSVMMTSDVPELGK SIPSLVHGNAFSFKFVDLKGRIHRINCGTEKLEELVSAVLDRIGATGEHHPQLLYEDDEGDKVLLATDSDLIGAVGHARCSGLKVLRLHLDLPESSDEKT KAEFDTTTVERSQWRSYQFGIVAGAVALTGIGLVVYLKRTQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52950			CBS / octicosapeptide/Phox/Bem...		Lus10025698 [exp]	0	1
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10002139 [exp]	1.4	0.8838
AT5G41120			Esterase/lipase/thioesterase f...		Lus10012560 [exp]	1.4	0.8782
AT3G47490			HNH endonuclease (.1.2.3)		Lus10034462 [exp]	2.2	0.8505
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10022735 [exp]	2.4	0.8419
AT3G19340			Protein of unknown function (D...		Lus10035127 [exp]	3.9	0.8715
AT4G33470		HDA14, ATHDA14	histone deacetylase 14 (.1)		Lus10010889 [exp]	4.5	0.8593
AT5G46390			Peptidase S41 family protein (...		Lus10004601 [exp]	5.3	0.8407
AT4G28600		NPGR2	no pollen germination related ...		Lus10022897 [exp]	12.0	0.8112
AT5G16690		ORC3, ATORC3	origin recognition complex sub...		Lus10034596 [exp]	13.4	0.8176
AT4G10000			Thioredoxin family protein (.1...		Lus10009466 [exp]	14.8	0.8060

Compare expression of checked genes

Lus10025698 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.