Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80190 281 / 1e-96 PSF1 partner of SLD five 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035964 [exp] 408 / 1e-145 AT1G80190 275 / 2e-94 partner of SLD five 1 (.1) Lus10036085 [exp] 336 / 5e-112 AT1G80190 253 / 1e-80 partner of SLD five 1 (.1) Lus10026797 [exp] 141 / 7e-41 AT5G11280 121 / 1e-33 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G142300 [exp] 330 / 8e-116 AT1G80190 290 / 6e-101 partner of SLD five 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05916 [flax] [poplar] Sld5 GINS complex protein
Representative CDS sequence Show only first row Show all	>Lus10025699 pacid=23177641 polypeptide=Lus10025699 locus=Lus10025699.g ID=Lus10025699.BGIv1.0 annot-version=v1.0 ATGTATGCTAGAAAGGCTTATGAGTTGGTGAAGGAGTTTTCCCAGTGCGAGAAAGGTCGTCTTCAGCAATTCAATGAGGATTTGTTCAACCAAGTCATTG ATCAATGCACTCAACATTACCTAGAGCTTCAAGCTTTAATTAGGAAAATGCAGGAAGATAATGTGGATGTGACGGAAACCAGAAATGAGGATCACTATGG AGCTCTTGTTCACCACCTCTCTTTGACTCGCAACAAACGCTGTTTAATGGCCTATGTGTATAACCGAACCGAAGTTATACAAAGTTTGGCATGGAAAGTG GGGTTTGAGCTCTTTGAGCTTCCAGAAGAAATTCAAGAGAAGCTCAGTGACTCAGAGAAGAACTATTTTGGGAAGCATTCTGCTGCTCTACAGTCCTATA TGGCTGATGTTGATATTGACTTGAACGTGGACATGGTGCCGCCTAAAGATCCTTACATCAAGGTGAGGGTTCTTGATGACATGGGTGGAGGGATAATGCT AAGTGACAAGACTGCCAATCTGGCTCGTCACTCAATGCACTTTCTGAAGAGAACTGATGCTGAGCAATATATTGCTCGGCTAGCTTCCATGGTCCAACAA GAGCTGCATGGTGGAACCAGAGGCTCTTCAGCGGTCACCATACTGTCAACCATCACATCAACCTTGAGCAATTGGGGGCAACATCTGTTTATACAAAGGC TTCTCTCCCCTTACACAAGGCAGCGTCTTAAGGCCGGCTTTCTGGACGCGGCAAGTCGTCCAAGGTCATGA
AA sequence Show only first row Show all	>Lus10025699 pacid=23177641 polypeptide=Lus10025699 locus=Lus10025699.g ID=Lus10025699.BGIv1.0 annot-version=v1.0 MYARKAYELVKEFSQCEKGRLQQFNEDLFNQVIDQCTQHYLELQALIRKMQEDNVDVTETRNEDHYGALVHHLSLTRNKRCLMAYVYNRTEVIQSLAWKV GFELFELPEEIQEKLSDSEKNYFGKHSAALQSYMADVDIDLNVDMVPPKDPYIKVRVLDDMGGGIMLSDKTANLARHSMHFLKRTDAEQYIARLASMVQQ ELHGGTRGSSAVTILSTITSTLSNWGQHLFIQRLLSPYTRQRLKAGFLDAASRPRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80190		PSF1	partner of SLD five 1 (.1)		Lus10025699 [exp]	0	1
AT1G05180		AXR1	AUXIN RESISTANT 1, NAD(P)-bind...		Lus10031562 [exp]	6.9	0.8172
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10032328 [exp]	7.7	0.7992
AT3G61370			Protein of unknown function (D...		Lus10001364 [exp]	8.1	0.7839
AT2G43080		AT-P4H-1	P4H isoform 1 (.1)		Lus10035434 [exp]	14.0	0.8152
AT2G02000		GAD3	glutamate decarboxylase 3 (.1)		Lus10009116 [exp]	26.7	0.7917
AT3G51070			S-adenosyl-L-methionine-depend...		Lus10028354 [exp]	49.8	0.7813
AT5G19410		ABCG23	ATP-binding cassette G23, ABC-...		Lus10033637 [exp]	56.5	0.7671
					Lus10029790 [exp]	67.7	0.7755
AT3G57620			glyoxal oxidase-related protei...		Lus10015949 [exp]	70.3	0.7575
AT5G58170		GDPDL7, SVL5	Glycerophosphodiester phosphod...		Lus10019606 [exp]	71.9	0.7419

Compare expression of checked genes

Lus10025699 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.