Plant FIBer expression Database

Lus10025700 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G63720 42 / 0.0009 KPL kokopelli (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035963
[exp]
102 / 6e-13 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G098300
[exp]
49 / 1e-05 AT5G63720 / kokopelli (.1)
PFAM info
Representative CDS sequence
>Lus10025700 pacid=23177446 polypeptide=Lus10025700 locus=Lus10025700.g ID=Lus10025700.BGIv1.0 annot-version=v1.0
ATGTGGATGACGTTGTGCGGTTGGGGGCCGGTGAGGCTAACACGCTGCAAGTTGGATTGGAAAACCAGACATGTATTGAAGAGTCTACTAGATGATGCTG
CTGCTGCTGCTCAACACAACCTCCAATGTTTCCACTCGACGACAAGATTTCCAAACCATGTTTCCCGACAAAAGACACTTTGCACTCTACATTCCCATGA
CAAGCTGTCAGTTTCCACCACCGAATCTATACCTAATAAGCAACTAGTTTCCGACTTGTCTAAACTCTCAGATTATCCTCCTCCAACCATCATGAAACGT
TGCCGCCTTTGTAACTCCAAGCACCCGCTCAACTCTGCCAACCTCGTTCCTTCATCATCAACTCATAAGGTTATGCAGAAAACTACCCAGGAGACACCCT
GGTTTCCCTCTTCATCTCCCTATATGAGATCAGCAGGACTACAACAACAACAACAGACTTCTTTTTCTTCTTCTTCTGTGGCGGCTTCGGAAGAATTCCA
AAATAAGCAGTTTCCTATTCATAGGATTGCATCCCGTTCAGAATGTCCACTCCACAGCATGGCTGAGGTAGAGATGATGCCTTTGACACACAGAGGTGAG
ACTTGTCAAACATTTCGGAAAAGCGTGTCTGAGGGCGCTTTCCTGCAAGTTCAATCACCAACACGAAAGGGTGTCCACAAAACACTTGGATCTTCCCAGC
AAGTCCTGAATGAGAATGTTGAACTGAGGGACACCATGGGATGGAAAAATTTGCCACAAAGGCCAACAGTGGATCAGAATACTTCAGCTTGGCCATCAGA
GAAGCATCACTACGTTCATGGTTTACGAGTCCCGCATAGCATGGATGATGTAGCCAGCAATTCAACCATCACTGCAGCAAAGGTGAAGACTAAGAACGAA
ATGTCCAGCCAAGTTGGTGACAGTCTGGTCCATGGTCCCAAGGCTAATCTGCAGAAAGATTCCAACTTGTATGCGAGTTCCATTTTGCTTCCCGAGACAG
TGCCATCCACATCAAAGAGTCATAACAAGCATACTAATACTCGAACAGAAATACAACCCACGCTGTTACATTATGACTCTTCATCCTCAAATAAGGGTGA
AGTACGTCTTGGAAGCACGAGTAGGACTCCCGAGAGGCTTTACATAGGTTCAAAACATATGGTGTCCCAAAGGCAGCTAAAGCACTCAAAGGAAAAATGG
AGCTCAAGTGCAAGTTCTCCTTCTTACTCTCCATCTTCCTCATTTGCTTCCTATAGCTGGACAAGTCGACAGCAAACAACCACTGGCTTCAGCAGCAACA
GCGAGAGCTTTTCAGGGAAAAGTGCTTCACCAAGAGAGTGTGCATCTACAAGCAGTGCACAGGAGCAGAGTAACAGTAACTCCTCATTCACTTCGTCGAG
TTATAATAGCAAGGTTGTGGATGGTCAAGATGGAGATAGTGGTAGCAGAAGAGCAAGATACAGATCAAGCAGCCAGAGAGCAGTTGGGCGGTTTAGGAGG
TTTAAGAATAAGCTGGGACTCATCTTTCACCATCACCATCATCACCACCATCACCATCATAAGGTCGATGACGGTAACACAAAACAAAGCACAAGTAGGC
ACCCCACTAGAATGTCGAAGCACTTGCATAAGACGTTTCAGCTTGACGAGAAGCCCGAGCTGCATGCAGAAAAAGCAGCGGTAAAACACGGAAGCGCAGC
GATCGACAGAAAGCAGGCACATTATTTTCATGAGCTGGTGCAGGGTTTGATCCATCATATTCGGCGGTCTAAGAAATCCAAAAAGCCAGAAAAGTCTGAA
GCAGGGATTAGACGTCATGGCCACAAGAAGGATCCGGGGCGAATACTTCAGCAGCAAGGTGGGGTCAAAATAACAAAAAGAAAGCAAGTCAAAGTCGGAA
TTAAAGGGAAGAAGCCACAGCTGAAGGCAGCTGAAGGATGA
AA sequence
>Lus10025700 pacid=23177446 polypeptide=Lus10025700 locus=Lus10025700.g ID=Lus10025700.BGIv1.0 annot-version=v1.0
MWMTLCGWGPVRLTRCKLDWKTRHVLKSLLDDAAAAAQHNLQCFHSTTRFPNHVSRQKTLCTLHSHDKLSVSTTESIPNKQLVSDLSKLSDYPPPTIMKR
CRLCNSKHPLNSANLVPSSSTHKVMQKTTQETPWFPSSSPYMRSAGLQQQQQTSFSSSSVAASEEFQNKQFPIHRIASRSECPLHSMAEVEMMPLTHRGE
TCQTFRKSVSEGAFLQVQSPTRKGVHKTLGSSQQVLNENVELRDTMGWKNLPQRPTVDQNTSAWPSEKHHYVHGLRVPHSMDDVASNSTITAAKVKTKNE
MSSQVGDSLVHGPKANLQKDSNLYASSILLPETVPSTSKSHNKHTNTRTEIQPTLLHYDSSSSNKGEVRLGSTSRTPERLYIGSKHMVSQRQLKHSKEKW
SSSASSPSYSPSSSFASYSWTSRQQTTTGFSSNSESFSGKSASPRECASTSSAQEQSNSNSSFTSSSYNSKVVDGQDGDSGSRRARYRSSSQRAVGRFRR
FKNKLGLIFHHHHHHHHHHHKVDDGNTKQSTSRHPTRMSKHLHKTFQLDEKPELHAEKAAVKHGSAAIDRKQAHYFHELVQGLIHHIRRSKKSKKPEKSE
AGIRRHGHKKDPGRILQQQGGVKITKRKQVKVGIKGKKPQLKAAEG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10025700
[exp]
0 1
AT5G65550 UDP-Glycosyltransferase superf... Lus10008956
[exp]
1.4 0.9016
Lus10035963
[exp]
2.0 0.8539
AT4G02380 SAG21, ATLEA5 Arabidopsis thaliana late embr... Lus10042672
[exp]
2.4 0.8777
AT3G26310 CYP71B35 "cytochrome P450, family 71, s... Lus10006443
[exp]
4.9 0.8521
Lus10034961
[exp]
5.7 0.8420
Lus10011661
[exp]
7.4 0.8528
AT5G48290 Heavy metal transport/detoxifi... Lus10016062
[exp]
8.5 0.8584
AT3G02100 UDP-Glycosyltransferase superf... Lus10040533
[exp]
9.1 0.7566
AT3G52240 unknown protein Lus10034158
[exp]
11.7 0.7969
AT4G12140 RING/U-box superfamily protein... Lus10007628
[exp]
13.0 0.7801

Lus10025700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.