Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08720 827 / 0 unknown protein AT4G01650 86 / 8e-19 Polyketide cyclase / dehydrase and lipid transport protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035962 [exp] 1328 / 0 AT5G08720 855 / 0.0 unknown protein Lus10007203 [exp] 81 / 2e-16 AT4G01650 257 / 5e-86 Polyketide cyclase / dehydrase and lipid transport protein (.1.2) Lus10010086 [exp] 79 / 9e-16 AT4G01650 257 / 2e-86 Polyketide cyclase / dehydrase and lipid transport protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G070700 [exp] 917 / 0 AT5G08720 906 / 0.0 unknown protein Potri.002G185100 [exp] 86 / 3e-18 AT4G01650 246 / 9e-82 Polyketide cyclase / dehydrase and lipid transport protein (.1.2) Potri.014G110600 [exp] 85 / 5e-18 AT4G01650 259 / 2e-86 Polyketide cyclase / dehydrase and lipid transport protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF03364 [flax] [poplar] Polyketide_cyc Polyketide cyclase / dehydrase and lipid transport
Representative CDS sequence Show only first row Show all	>Lus10025701 pacid=23177674 polypeptide=Lus10025701 locus=Lus10025701.g ID=Lus10025701.BGIv1.0 annot-version=v1.0 ATGGTGATGCAGTATCCCATTTCATCATCACTGCCTTCCATTCCACACACCTGTTCTTGTTGCACCAGATCACGTCGCTTCATCTTCTTCGAGAAATGCT CCTCGTTACCGGATAGGAGCGGCAGAAGCAATGTGGTGTGTTTATCCTCCAGATCACCCAAGAAATGGAACAGTAACTACGGCGGAAGCATGGGATGCGA TGGCGGGGCTGTCATAAAAGTTGAAGAAGGTGGAGTTGAGGTTAGTAGTGAGGTTAGTAGGAGGAGGAGGAGTAGGAGGAGGCAGCGGTCTGTTCCTTGT GAGGTGGAAGTGGTTTCTTGGCGGGAACGGAAGATTAAGGCTCATATCCATGTCAATTCCGATGTCCAATCCGTCTGGATAGCACTAACTGATTATGAAC GCCTCGCCGATTTCATCCCTAACCTCATCTCCAGTGGAAGAATCCCTTGCCCGCATCCAGGCCGGATATGGCTTGAACAGAGAGGATTGCAGAGGGCTCT TTATTGGCACATTGAAGCTCGTGTTGTGTTGGATCTCCAAGAACACCCCATTTCTGATGATTGCCACGAGCTACACTTTTCCATGGTCGATGGTGACTTT AAGAAGTTTGAAGGCAAATGGTCCGTCAACTCTGGGGCAAGGCCTGGAACAACTGTATTGTGTTACGAAGTTAGTGTCATACCAAGGTTCAACTTCCCTG CTATTTTCTTGGAAAGAATCATCAGGTCGGATCTTCCTGTCAATCTCCAGGCCTTGGCTTGTCGTGCTGAGAAACAAGTTATAGCCAAGTCCGATCATAA GACCAAAACGGACGAAAGATCCATCTCAGAGCCTAGAATTTTAGGAGACACCTATAGCACCGCAAATCTTAGTCCTGTTCCAACATCCCCAAGCGACATC AATTGTAATTGGGGTATTTTTGGTAAAGCCTGTAGTCTTGACAGGCGCTGCCTGGTAGATGAAGTCCATTTGCGAAGATTTGACGGCTTATTGGAAAATG GAGGTGTTCATCGTGGCGTTGTGGCTACCATAACTGTAAAAGCTCCTCTTCGTGAGGTTTGGAATGTTTTGACCTCTTATGAGAGTCTTCCTGAGATTGT TCCAAACTTAGCAATCAGCAAGATTCTATCTCGTGAAAACAACAAAGTTCGCATTCTTCAGGAAGGTTGCAAGGGTTTACTCTATATGGTACTTCATGCA CGTGTTGTCTTGGATTTATGCGAACGATATGAACAAGAGATCAGTTTTGAGCAGGCAGAAGGAGACTTTGACTCATTTCATGGAAAGTGGGTTCTAGAAC AGCTGGGAAGTCATCATACATTACTCAAATACGTTGTCGAATCCAAAATGCATAAAGATACCTTTCTCTCAGAGGCTATAATGGAAGAGGTTATATATGA AGATCTCCCATCAAACTTGTGTGCAATTCGAGATTATGTTGAGAAAAAGCAGGCTGTGAATTCCTCCGAACCAGATGACCTCAGGAAGTATTCTGAGCTT AAACTTCCCAGTGTTGATAGTGACCTTAATAATACTTCAGCAGAAGAACACGTTACAGACTTTGATGATGTCATCTCTTCAAGACAAAAGCCGAGAGTTC CAGGCTTACAACGGGACGTTGAAATTCTGAAATCAGAACTCCTGAAGTTTGTATCACAACACGGGCAGGAGGGATTCATGCCCATGAGAAAGCAACTCCG TCTGCATGGAAGAGTGGACATAGAGAAGGCCATAACTCGCATGGGTGGATTTAGACGAATTGCATCATTGATGAATCTATCTCTTGCTTACAAGAACAGG AAACCCAAAGGATACTGGGACAGCCTCGATACTTTGCAGGAAGAGATTAATCGATTCCAGAGGAGTTGGGGAATGGACCCTTCTTTTATGCCAAGCAGAA AATCTTTTGAGCGTGCAGGTAAAACTTTAAAGCAGAAGTCTGGTTTTGCTGTCAGTCACATTCGCTTCACTGTTTCACAGCTCATTCTACTGGCCAGAAA TAAAAAATTCTTTCTGATAGGTCGTTATGATATTGCACGTGCATTGGAGAAATGGGGAGGGGTTCATGAAGTTTCTCGGCTGTTGGCACTTAAGGTTCGG TATCCCAATAAACAGTTAGATGTGGTTAGAGAAAAAAAGTTTGACCAGTGGGCATCAAGTAGCTTTGAAGAGGAGCAAAAAGTTCCTTCAACAAAATATT ACACACCTCAAAAAACTCGTAAATCGCTAACCACATTGGAAGATTTGGACATTGATTGGGGTGAATAA
AA sequence Show only first row Show all	>Lus10025701 pacid=23177674 polypeptide=Lus10025701 locus=Lus10025701.g ID=Lus10025701.BGIv1.0 annot-version=v1.0 MVMQYPISSSLPSIPHTCSCCTRSRRFIFFEKCSSLPDRSGRSNVVCLSSRSPKKWNSNYGGSMGCDGGAVIKVEEGGVEVSSEVSRRRRSRRRQRSVPC EVEVVSWRERKIKAHIHVNSDVQSVWIALTDYERLADFIPNLISSGRIPCPHPGRIWLEQRGLQRALYWHIEARVVLDLQEHPISDDCHELHFSMVDGDF KKFEGKWSVNSGARPGTTVLCYEVSVIPRFNFPAIFLERIIRSDLPVNLQALACRAEKQVIAKSDHKTKTDERSISEPRILGDTYSTANLSPVPTSPSDI NCNWGIFGKACSLDRRCLVDEVHLRRFDGLLENGGVHRGVVATITVKAPLREVWNVLTSYESLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHA RVVLDLCERYEQEISFEQAEGDFDSFHGKWVLEQLGSHHTLLKYVVESKMHKDTFLSEAIMEEVIYEDLPSNLCAIRDYVEKKQAVNSSEPDDLRKYSEL KLPSVDSDLNNTSAEEHVTDFDDVISSRQKPRVPGLQRDVEILKSELLKFVSQHGQEGFMPMRKQLRLHGRVDIEKAITRMGGFRRIASLMNLSLAYKNR KPKGYWDSLDTLQEEINRFQRSWGMDPSFMPSRKSFERAGKTLKQKSGFAVSHIRFTVSQLILLARNKKFFLIGRYDIARALEKWGGVHEVSRLLALKVR YPNKQLDVVREKKFDQWASSSFEEEQKVPSTKYYTPQKTRKSLTTLEDLDIDWGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08720			unknown protein		Lus10025701 [exp]	0	1
AT5G08720			unknown protein		Lus10035962 [exp]	1.0	0.9811
AT5G64940		ATATH13, ATOSA1	A. THALIANA OXIDATIVE STRESS-R...		Lus10036636 [exp]	1.4	0.9658
AT4G37380			Tetratricopeptide repeat (TPR)...		Lus10024971 [exp]	3.2	0.9221
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10043323 [exp]	3.5	0.9503
AT5G22620			phosphoglycerate/bisphosphogly...		Lus10020553 [exp]	4.0	0.9440
AT3G19490		ATNHD1	ARABIDOPSIS THALIANA NA/H ANTI...		Lus10019820 [exp]	4.2	0.9221
AT5G64940		ATATH13, ATOSA1	A. THALIANA OXIDATIVE STRESS-R...		Lus10035853 [exp]	5.0	0.9399
AT5G05580		AtFAD8, SH1, FA...	fatty acid desaturase 8 (.1.2)		Lus10005039 [exp]	5.3	0.9196
AT2G21340			MATE efflux family protein (.1...		Lus10041955 [exp]	5.7	0.9217
AT5G35170			adenylate kinase family protei...		Lus10036326 [exp]	7.9	0.9292

Compare expression of checked genes

Lus10025701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.