Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63710 348 / 3e-114 Leucine-rich repeat protein kinase family protein (.1) AT5G65240 328 / 1e-106 Leucine-rich repeat protein kinase family protein (.1.2) AT5G10290 327 / 5e-106 leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G34210 300 / 2e-95 ATSERK2, SERK2 somatic embryogenesis receptor-like kinase 2 (.1) AT1G71830 298 / 1e-94 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT4G33430 285 / 5e-90 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT2G13790 269 / 1e-83 BAK7, BKK1, ATSERK4 BAK1-LIKE 1, BRI1- ASSOCIATED KINASE 7, somatic embryogenesis receptor-like kinase 4 (.1) AT2G13800 266 / 7e-83 BAK8, ATSERK5 BRI1- ASSOCIATED KINASE 8, SOMATIC EMBRYOGENESIS RECEPTOR LIKE KINASE 5, somatic embryogenesis receptor-like kinase 5 (.1) AT3G25560 263 / 5e-81 NIK2 NSP-interacting kinase 2 (.1.2.3) AT1G60800 254 / 6e-78 NIK3 NSP-interacting kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023146 [exp] 319 / 3e-105 AT5G10290 680 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10000629 [exp] 320 / 3e-103 AT5G10290 914 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10006057 [exp] 304 / 1e-97 AT1G71830 954 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10028716 [exp] 303 / 7e-97 AT1G71830 1000 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10025358 [exp] 287 / 9e-95 AT4G33430 500 / 2e-176 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Lus10020962 [exp] 293 / 9e-93 AT4G33430 989 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Lus10035959 [exp] 259 / 2e-82 AT5G63710 225 / 7e-68 Leucine-rich repeat protein kinase family protein (.1) Lus10019145 [exp] 259 / 7e-80 AT5G16000 935 / 0.0 NSP-interacting kinase 1 (.1) Lus10006056 [exp] 258 / 1e-79 AT1G71830 731 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G001800 [exp] 361 / 4e-119 AT5G63710 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G306000 [exp] 354 / 1e-116 AT5G63710 791 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G094500 [exp] 323 / 1e-104 AT5G10290 837 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.005G074200 [exp] 322 / 3e-104 AT5G10290 855 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.019G087700 [exp] 302 / 2e-96 AT1G34210 1012 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.005G083300 [exp] 301 / 8e-96 AT1G71830 981 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Potri.013G117200 [exp] 300 / 1e-95 AT1G34210 1013 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.007G082400 [exp] 295 / 1e-93 AT1G34210 954 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.001G206700 [exp] 291 / 2e-92 AT4G33430 927 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Potri.003G023000 [exp] 291 / 3e-92 AT4G33430 961 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10025703 pacid=23177586 polypeptide=Lus10025703 locus=Lus10025703.g ID=Lus10025703.BGIv1.0 annot-version=v1.0 ATGCCTACTGCATCACTTTCAGACGAGGGAGCAAGACGGTCCATGGCTGAACTTGGTTTCGGCGCTAACAGAAATAAGGGTTTGGGTTATTGGTGCGCCT GTCATCACCTTATTATAAAGCTACTCATCAGCTGTGTTTTACTGCTCAACTTGGTCACCACAGGCACTCATTCATCCCAGGAGCCTGATGTTGAAGGGGA AGCGCTGATCAAGCTTTTGAAAGCCCTCCATGACTCCAAGAAGCAAATAACAGATTGGAATTACTACTTCGTCAGCCCTTGCAACAGTTGGTCTCATGTC ACCTGTAGAAATGGAAGTGTCATCTCTTTGGAACTGCAGGACAATAATCTGTCAGGGCCATTGCCTGATTACCTTGGCAGCATGACCCACCTTCAGGTTC TAAACATAGCTAACAATAACTTCAACGGCTCCATACCCACTACTTGGGATCACCTCTCCAACTTAAACCACTTGCGAAGACGACCGCAAGATGTGTTGCT TCGGGCAGCTGCGGAGATTCTCACTGCGGGAGATGTCTCCCCCACCCCCGCCACGGAGAGCATCCTGGTTTACCCTTACATGCGCAACCTCAGCCTCGCC CATCGCCTGCGGGAGCTCAAGCCTGGGGATAAGCCCTTGGGCTGGGCTGCCAGGAAGAGGATTGCTGTCGGGTCGGCCCATGGGCTTGAGTATCTTCACG AGCATTGCAGCCCCAAGATCATACACCGGGATTTGAAAGCTGCGAATATATTGCTGGACGAGGATTTCGAGCCTGTGCTGGGTGACTTTGGGTTGGCCAA GCTGGTGGACACCAAAATGACACATGTCACTACTCAGGTTCGGGGCACCATGGGTCACATTGCCCCCGAGTACTTATCCACCGGAAAGTCGTCGGAGAAG ACGGATGTGTTCGGGTACGGGGTCACTCTGTTGGAGCTGATTACGGGTCAGCGGGCTATTGATCTCTCTCGGCTGGAGGACGAAGAGGACGTTCTGCTTC TAGATCATATCAGGAAGGTAGTGAGGGAGAAAAGATTGGAGGACATAGTAGACAAGAACTTGGAGAGGGAGGATTACGAGGTAAAAGAGGTGGAAAGGAT GGTGCAGGTGGCGTTGTTGTGCACACAAAGCTCGCCGGAGGAACGACCGAGGATGGGGGAAGTGGTAAAGATGCTGGGAGGAGAAGGGGCGGAGCTGGAA GAGAGATGGGCAGAGTGGGAGCAAGTTGAGGATGTGAGGAACGAGCAGGAGTTCGCGCTGCTCTTCGCTCATGGCCACCACTTTGCCAATGTGTGGACCG ACGATTCTACAAATCAAGAGGCTATTCAGTTGTCCAAGCCCAGATGA
AA sequence Show only first row Show all	>Lus10025703 pacid=23177586 polypeptide=Lus10025703 locus=Lus10025703.g ID=Lus10025703.BGIv1.0 annot-version=v1.0 MPTASLSDEGARRSMAELGFGANRNKGLGYWCACHHLIIKLLISCVLLLNLVTTGTHSSQEPDVEGEALIKLLKALHDSKKQITDWNYYFVSPCNSWSHV TCRNGSVISLELQDNNLSGPLPDYLGSMTHLQVLNIANNNFNGSIPTTWDHLSNLNHLRRRPQDVLLRAAAEILTAGDVSPTPATESILVYPYMRNLSLA HRLRELKPGDKPLGWAARKRIAVGSAHGLEYLHEHCSPKIIHRDLKAANILLDEDFEPVLGDFGLAKLVDTKMTHVTTQVRGTMGHIAPEYLSTGKSSEK TDVFGYGVTLLELITGQRAIDLSRLEDEEDVLLLDHIRKVVREKRLEDIVDKNLEREDYEVKEVERMVQVALLCTQSSPEERPRMGEVVKMLGGEGAELE ERWAEWEQVEDVRNEQEFALLFAHGHHFANVWTDDSTNQEAIQLSKPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63710			Leucine-rich repeat protein ki...		Lus10025703 [exp]	0	1
AT5G27690			Heavy metal transport/detoxifi...		Lus10033469 [exp]	1.4	0.9628
AT5G63710			Leucine-rich repeat protein ki...		Lus10035959 [exp]	2.8	0.9538
AT5G19040		ATIPT5	Arabidopsis thaliana ISOPENTEN...		Lus10034025 [exp]	4.5	0.9353
AT2G36650			unknown protein		Lus10014389 [exp]	4.9	0.9467
AT3G24770		CLE41	CLAVATA3/ESR-RELATED 41 (.1)		Lus10011868 [exp]	5.7	0.9360
AT4G15450			Senescence/dehydration-associa...		Lus10012957 [exp]	6.0	0.9376
AT5G37660		PDLP7	plasmodesmata-located protein ...		Lus10020814 [exp]	6.2	0.9319
					Lus10028522 [exp]	6.3	0.9239
					Lus10010378 [exp]	7.5	0.9396
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10003944 [exp]	8.8	0.9000

Compare expression of checked genes

Lus10025703 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.