Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14650 334 / 2e-109 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) AT1G14640 273 / 1e-86 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1) AT5G06520 125 / 2e-32 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1) AT4G16200 112 / 2e-29 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1) AT3G49130 71 / 6e-14 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1) AT1G18050 62 / 7e-11 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1) AT2G43960 60 / 4e-10 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1) AT5G12280 59 / 1e-09 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.2) AT3G27600 58 / 2e-09 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1) AT5G55100 56 / 1e-08 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035958 [exp] 542 / 0 AT1G14650 886 / 0.0 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Lus10013966 [exp] 382 / 3e-129 AT1G14650 672 / 0.0 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Lus10007278 [exp] 304 / 2e-100 AT1G14650 512 / 3e-174 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Lus10015391 [exp] 180 / 2e-57 AT1G14650 119 / 4e-32 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Lus10032646 [exp] 61 / 3e-10 AT5G55100 499 / 3e-164 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2) Lus10043105 [exp] 60 / 6e-10 AT5G55100 504 / 1e-165 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2) Lus10015703 [exp] 47 / 1e-05 AT3G52120 477 / 2e-166 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G070700 [exp] 438 / 1e-149 AT1G14650 810 / 0.0 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Potri.005G094600 [exp] 430 / 2e-146 AT1G14650 814 / 0.0 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Potri.001G356800 [exp] 58 / 4e-09 AT5G55100 420 / 6e-133 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2) Potri.001G269900 [exp] 47 / 7e-06 AT3G52120 500 / 3e-176 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2) Potri.009G064600 [exp] 47 / 8e-06 AT3G52120 509 / 1e-179 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12230 [flax] [poplar] PRP21_like_P Pre-mRNA splicing factor PRP21 like protein PF01805 [flax] [poplar] Surp Surp module
Representative CDS sequence Show only first row Show all	>Lus10025704 pacid=23177439 polypeptide=Lus10025704 locus=Lus10025704.g ID=Lus10025704.BGIv1.0 annot-version=v1.0 ATGCCAGGCACAGCAATTTTGACTCTGCCAGCACCTCCTCCTCACTCAGAAGGGTCTCCTCCTCCCCCATCCCAACTGTCAGAACATAATTCCAATGAAG AAAACCCAGTGAATGAGGAACATAATAGAGCTCCGGTTGCTACCCACACCAGAACCATTGGAATTATTCATCCTCCTCCAGATATCAGGAATATTGTTGA CAAAACAGCCCAGTTTGTTGCCAAAAATGGACCCGAGTTTGAGAAAAGGATTATGGCTCATAATGCCAACAATGCTAAATTCAACTTTTTGAATCCCAAC GATCCATATCATGCATATTATCAACATCGGTTGTCCGAGTCTCGCACCCAGAATCTGTCTTCTACACAACAGCCTACCTCTGATCTGCCAGATTCTGCTG CCCCTGAGTCTATTCCATCTGGTGCTGATGATGATGGAACCGAAGCAGCTCCAAAGCCTGACCCTGCTGCCCAATTTAGACTACCAACTCGCAAGGTTCT TGAACCACCTGAAGCTGAGCAGTATACAGTTCGGCTTCCTGAAGGGATTACTGGAGAAGAACTTGATATTATTAAGCTGACTGCACAGTTTGTAGCACGC AATGGGCAAACATTCCTTACTGGCCTCACTAATAGGGAGATGAACAACTCCCAGTTCCACTTTATGAAGCCAACCCACAGCATGTTTACTTTCTTCACAG GCCTTGCAGATGCCTATTCAAAAGTGCTGATGCCTCCAAAAGGTTTAACAGAGAAGTTGACAAACAGTGTTGCTGACATGACCACTGTGCTTGAGAGATG TTTGCATCGTCTAGAGTGGGAGCGGTCACAGGAGCAGGCAAGACAGAAGGCCGAGGATGAGACGAGCTGA
AA sequence Show only first row Show all	>Lus10025704 pacid=23177439 polypeptide=Lus10025704 locus=Lus10025704.g ID=Lus10025704.BGIv1.0 annot-version=v1.0 MPGTAILTLPAPPPHSEGSPPPPSQLSEHNSNEENPVNEEHNRAPVATHTRTIGIIHPPPDIRNIVDKTAQFVAKNGPEFEKRIMAHNANNAKFNFLNPN DPYHAYYQHRLSESRTQNLSSTQQPTSDLPDSAAPESIPSGADDDGTEAAPKPDPAAQFRLPTRKVLEPPEAEQYTVRLPEGITGEELDIIKLTAQFVAR NGQTFLTGLTNREMNNSQFHFMKPTHSMFTFFTGLADAYSKVLMPPKGLTEKLTNSVADMTTVLERCLHRLEWERSQEQARQKAEDETS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10025704 [exp]	0	1
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Lus10019778 [exp]	3.2	0.9462
AT4G21710		NRPB2, EMB1989	EMBRYO DEFECTIVE 1989, DNA-dir...		Lus10011182 [exp]	3.5	0.9332
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Lus10041333 [exp]	4.0	0.9062
AT3G23780		NRPE2, DMS2, DR...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10027166 [exp]	4.2	0.9265
AT1G61010		CPSF73-I	cleavage and polyadenylation s...		Lus10001371 [exp]	4.6	0.9154
AT2G04660		APC2	anaphase-promoting complex/cyc...		Lus10030444 [exp]	4.9	0.9164
AT5G36950		DEGP10	DegP protease 10 (.1)		Lus10008726 [exp]	7.3	0.9141
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10021457 [exp]	7.7	0.9009
AT5G11560			catalytics (.1)		Lus10022144 [exp]	8.0	0.9152
AT1G14850		NUP155	nucleoporin 155 (.1)		Lus10003701 [exp]	8.2	0.9197

Compare expression of checked genes

Lus10025704 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.