Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14650 191 / 3e-54 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) AT1G14640 183 / 1e-51 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1) AT5G12280 115 / 2e-28 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.2) AT5G06890 67 / 3e-14 Ubiquitin-like superfamily protein (.1) AT5G42220 44 / 0.0001 Ubiquitin-like superfamily protein (.1) AT2G35635 40 / 0.0007 UBQ7, RUB2 RELATED TO UBIQUITIN 2, ubiquitin 7 (.1) AT1G31340 40 / 0.0008 NEDD8, ATRUB1, RUB1 ARABIDOPSIS THALIANA RELATED TO UBIQUITIN 1, related to ubiquitin 1 (.1) AT3G27600 0 / 1 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035958 [exp] 447 / 1e-151 AT1G14650 886 / 0.0 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Lus10013966 [exp] 214 / 2e-63 AT1G14650 672 / 0.0 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Lus10007278 [exp] 191 / 2e-55 AT1G14650 512 / 3e-174 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Lus10034563 [exp] 42 / 0.0006 AT5G42220 444 / 3e-148 Ubiquitin-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G070700 [exp] 215 / 4e-63 AT1G14650 810 / 0.0 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Potri.005G094600 [exp] 211 / 1e-61 AT1G14650 814 / 0.0 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Potri.005G096700 [exp] 40 / 0.0008 AT1G31340 270 / 2e-94 ARABIDOPSIS THALIANA RELATED TO UBIQUITIN 1, related to ubiquitin 1 (.1) Potri.002G062500 [exp] 40 / 0.0008 AT1G31340 296 / 9e-105 ARABIDOPSIS THALIANA RELATED TO UBIQUITIN 1, related to ubiquitin 1 (.1) Potri.005G198700 [exp] 40 / 0.0009 AT1G31340 293 / 1e-103 ARABIDOPSIS THALIANA RELATED TO UBIQUITIN 1, related to ubiquitin 1 (.1) Potri.016G077000 [exp] 39 / 0.0009 AT3G52590 194 / 1e-65 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00240 [flax] [poplar] ubiquitin Ubiquitin family CL0072 [flax] [poplar] PF12230 [flax] [poplar] PRP21_like_P Pre-mRNA splicing factor PRP21 like protein
Representative CDS sequence Show only first row Show all	>Lus10025705 pacid=23177592 polypeptide=Lus10025705 locus=Lus10025705.g ID=Lus10025705.BGIv1.0 annot-version=v1.0 ATGTCAGAACACATGAGGATTTCTCTAATTGATCCCAAGTACAAGGAGCAAAAGGAGAGGATGTTTGCTAAGATTCGGGAGACCACTCTTGCTGCCGATG ATGAAATTTCAAAAAACATTGTGGGCCTTGCACGAACCCGTCCTGATATTTTTGGCACAACAGAGGAGGAGGTGTCTAACGCAGTTCAGGCTGAAATTGA GAAAAAGAAAGATGAGCAACCAAAGCAGGTTATATGGGATGGCCACACTGGAAGCATTGGGCGCACTGCTAACCAGGCAATGTCCCAAAGTCTTGGTGAC GATCAAAATGAGGCTATGAACAGTGACGGACGAAACTTACCTGGACCAGCTGCTCCTCCTCCCCGTCCTGGTCTACCATCACTTCGACCGCTTCCTCCAC CGCCTGGACTGGCTCTTAATGTCCCCCGCATGCCTCCAAATGCAGTCTCATATTCAACTTCTATGGGTGGTGGATATCCTGTCCCTCTGCCAAGGCCACC AGGTATGCCATTGATGCCAACAATTCGTCCACCACCTCCTCCAATGCCAGGACAGCAGCCGATGATGATGAATCAACCTTCCTCTATGAATCCACCAAAC ATGCCAGTACCACCTCCACCAGGCTCTCAGTTTGCTCCCATGCCAATGCACCGTCCTTTTGCCCCTATGTCTATGCCTCCACCACACATGCATGCAATGG CCCCGCCTCCACCCTTACCTCAGGGGGTGCCTCCACCACCTCCTTCTGAGGATGCTCCTCCACTTCCAGAAGAACCCGAGCCCAAGAGGCAGAAGCTAGA TGATTCAATGCTTATTCCAGAAGAGCAGTTTTTGGCCCAGCATCCGGGACCTGCAAGCATCAGTGTTACTGTTCCTAGTGTCGATGAAGGAAATCTAAGA GGTCAAGTGCTGGAGATTAGAGTCCAATCATTGTCAGAAACGATTCTCAGTCTGAAGGAGAAGATTGCAGGAGAGATCCAACTTGCTTCCAACAAGCAGA AATTGAGTCAAAAGGCTCGTTTCCTGAAGGATAATATGAGCCTTGCTTACTACAATGTCCGCGGTGGAGATTCACTTACTCTGACGTTGAGAGAGCGCGG TGGGAAAAAGAAATAA
AA sequence Show only first row Show all	>Lus10025705 pacid=23177592 polypeptide=Lus10025705 locus=Lus10025705.g ID=Lus10025705.BGIv1.0 annot-version=v1.0 MSEHMRISLIDPKYKEQKERMFAKIRETTLAADDEISKNIVGLARTRPDIFGTTEEEVSNAVQAEIEKKKDEQPKQVIWDGHTGSIGRTANQAMSQSLGD DQNEAMNSDGRNLPGPAAPPPRPGLPSLRPLPPPPGLALNVPRMPPNAVSYSTSMGGGYPVPLPRPPGMPLMPTIRPPPPPMPGQQPMMMNQPSSMNPPN MPVPPPPGSQFAPMPMHRPFAPMSMPPPHMHAMAPPPPLPQGVPPPPPSEDAPPLPEEPEPKRQKLDDSMLIPEEQFLAQHPGPASISVTVPSVDEGNLR GQVLEIRVQSLSETILSLKEKIAGEIQLASNKQKLSQKARFLKDNMSLAYYNVRGGDSLTLTLRERGGKKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10025705 [exp]	0	1
AT1G71800		CSTF64	cleavage stimulating factor 64...		Lus10009670 [exp]	1.4	0.9404
AT1G73840		ESP1	ENHANCED SILENCING PHENOTYPE 1...		Lus10009030 [exp]	2.8	0.9300
AT1G17370		UBP1B	oligouridylate binding protein...		Lus10013167 [exp]	5.1	0.9031
AT3G43590			zinc knuckle (CCHC-type) famil...		Lus10013378 [exp]	5.3	0.9029
AT3G22990		LFR	LEAF AND FLOWER RELATED, ARM r...		Lus10006635 [exp]	6.2	0.8969
AT3G21350		MED6	RNA polymerase transcriptional...		Lus10022814 [exp]	7.5	0.9165
AT1G30460	C3HZnF	CPSF30, ATCPSF3...	ARABIDOPSIS THALIANA CLEAVAGE ...		Lus10023254 [exp]	8.5	0.9098
AT4G03120			C2H2 and C2HC zinc fingers sup...		Lus10037576 [exp]	9.3	0.8545
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Lus10035658 [exp]	10.2	0.9063
AT2G01710			Chaperone DnaJ-domain superfam...		Lus10015891 [exp]	11.0	0.8637

Compare expression of checked genes

Lus10025705 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.