Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65590 181 / 2e-54 DOF AtDof5,7 Dof-type zinc finger DNA-binding family protein (.1) AT1G51700 118 / 7e-32 DOF ADOF1, AtDof1. 7 DOF zinc finger protein 1 (.1) AT2G37590 118 / 2e-30 DOF AtDof2. 4, ATDOF2.4 DNA binding with one finger 2.4 (.1) AT5G60200 115 / 4e-30 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT3G21270 114 / 4e-30 DOF ADOF2, AtDof3. 1 DOF zinc finger protein 2 (.1) AT5G60850 116 / 5e-30 DOF OBP4, AtDof5. 4 OBF binding protein 4 (.1) AT2G28510 115 / 1e-29 DOF AtDof2,1 Dof-type zinc finger DNA-binding family protein (.1) AT1G07640 115 / 1e-29 DOF OBP2, AtDof1. 1 Dof-type zinc finger DNA-binding family protein (.1.2.3) AT2G28810 114 / 3e-29 DOF AtDof2. 2 Dof-type zinc finger DNA-binding family protein (.1.2) AT5G02460 114 / 1e-28 DOF AtDof5. 1 Dof-type zinc finger DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035955 [exp] 396 / 4e-138 AT5G65590 196 / 4e-60 Dof-type zinc finger DNA-binding family protein (.1) Lus10025340 [exp] 118 / 6e-30 AT2G37590 182 / 4e-54 DNA binding with one finger 2.4 (.1) Lus10016566 [exp] 117 / 6e-30 AT3G55370 160 / 2e-46 OBF-binding protein 3 (.1.2.3) Lus10034652 [exp] 114 / 1e-29 AT5G60850 162 / 4e-48 OBF binding protein 4 (.1) Lus10015425 [exp] 114 / 2e-29 AT5G60200 129 / 8e-36 TARGET OF MONOPTEROS 6 (.1) Lus10017882 [exp] 114 / 2e-29 AT5G60850 167 / 3e-50 OBF binding protein 4 (.1) Lus10014002 [exp] 112 / 2e-29 AT5G60200 124 / 7e-35 TARGET OF MONOPTEROS 6 (.1) Lus10014001 [exp] 114 / 3e-29 AT5G60200 128 / 1e-35 TARGET OF MONOPTEROS 6 (.1) Lus10040305 [exp] 116 / 4e-29 AT3G55370 147 / 1e-40 OBF-binding protein 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G149100 [exp] 204 / 4e-63 AT5G65590 197 / 1e-60 Dof-type zinc finger DNA-binding family protein (.1) Potri.007G058200 [exp] 201 / 7e-62 AT5G65590 192 / 1e-58 Dof-type zinc finger DNA-binding family protein (.1) Potri.015G048300 [exp] 120 / 3e-31 AT5G60850 152 / 1e-43 OBF binding protein 4 (.1) Potri.011G055600 [exp] 120 / 6e-31 AT1G28310 140 / 1e-38 Dof-type zinc finger DNA-binding family protein (.1.2) Potri.005G134200 [exp] 119 / 7e-31 AT5G60200 124 / 2e-33 TARGET OF MONOPTEROS 6 (.1) Potri.001G238400 [exp] 119 / 7e-31 AT3G55370 160 / 9e-47 OBF-binding protein 3 (.1.2.3) Potri.004G046600 [exp] 119 / 8e-31 AT1G28310 135 / 6e-37 Dof-type zinc finger DNA-binding family protein (.1.2) Potri.008G055100 [exp] 119 / 9e-31 AT3G55370 146 / 7e-41 OBF-binding protein 3 (.1.2.3) Potri.007G038100 [exp] 119 / 1e-30 AT5G60200 122 / 5e-33 TARGET OF MONOPTEROS 6 (.1) Potri.012G063800 [exp] 118 / 2e-30 AT5G60850 137 / 9e-38 OBF binding protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [flax] [poplar] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Lus10025707 pacid=23177508 polypeptide=Lus10025707 locus=Lus10025707.g ID=Lus10025707.BGIv1.0 annot-version=v1.0 ATGTCTGGAATCCATCTTCAGCAGCAGCAGCAGCAGAACGAAAAGGAAGTCAAAGGGAACAAAGCAGCATCATCATCTTCATCTACGGCGGCGGCAGCAG GTGATGAGGGTGTGGTGATAATAAAGTGCCCTAGATGCGACTCCCCCAACACAAAATTCTGCTACTACAACAACTACAGCCTCAGCCAGCCCCGCCACTT CTGCAAGACTTGCCGACGCTACTGGACCAAAGGAGGCGCCCTCCGTAACGTCCCCGTCGGTGGCGGCTGCCGCAAGTCCAAGAAACTCAAGTCCTCTACT TCTTACTCCTCCTCCGCCTCCGCCACCTCAGCAGCAGCTGCTGCCTATGCTTCTTCTTCCTCCTCCGATCTTTCCGGGTTCAAATTCTTCTCCCCACCAC CTACTAGTACTATGGACTTCAACCTCAAAGGCCTGTCCTTAATGTCACCTCCCGGCCCCTCCACTTACAACCATCATAATCATCATCCTTTCGGGATGGA TCTCTCAGTTTCATCCCTGGAGCCGCCGTATGGAATGGGTGGTGGTTCGATGAACGTGAACACGAGCCTGGCGTCTTCGATAGAGTCGCTGAGCTGTATG AACCAGGATCTGCACTGGAAACTGCAGCAGCAGAGATTAGGATTGCTCAAAGAAGATGGTACTGGTGGTGGGGTAGTTGTGGAGGCGGAGAAGGCGCCCC TGCAGCCGATACTGTTCAGGGAGCTTAATACTACAAGCAGGCTGCAGCAACATTATCCTCAACAAGCTAGGGCCGGAGGAGGAGGAGGAGATCATGAATC GTCATCCGCGGCCGCAACAGAGTGGTTCTTCGGGAATTCATCATACGTTCAACAAGTGACTAGTGCTGCTGGTGATCATCATCAAGCCGCCGCTAGTACT CCTCCAAGCAATAATAATAACACTACTGTTACTAATGCGAATCAGATTCAACAGCAGCAACATGATCATCATGATCAAACTGAGACAAATTGGAATGTGA GCGGGCAGCAGGTTCATGCTTGGGGTGATCTGCATCCATACAACCACTAG
AA sequence Show only first row Show all	>Lus10025707 pacid=23177508 polypeptide=Lus10025707 locus=Lus10025707.g ID=Lus10025707.BGIv1.0 annot-version=v1.0 MSGIHLQQQQQQNEKEVKGNKAASSSSSTAAAAGDEGVVIIKCPRCDSPNTKFCYYNNYSLSQPRHFCKTCRRYWTKGGALRNVPVGGGCRKSKKLKSST SYSSSASATSAAAAAYASSSSSDLSGFKFFSPPPTSTMDFNLKGLSLMSPPGPSTYNHHNHHPFGMDLSVSSLEPPYGMGGGSMNVNTSLASSIESLSCM NQDLHWKLQQQRLGLLKEDGTGGGVVVEAEKAPLQPILFRELNTTSRLQQHYPQQARAGGGGGDHESSSAAATEWFFGNSSYVQQVTSAAGDHHQAAAST PPSNNNNTTVTNANQIQQQQHDHHDQTETNWNVSGQQVHAWGDLHPYNH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65590	DOF	AtDof5,7	Dof-type zinc finger DNA-bindi...		Lus10025707 [exp]	0	1
AT5G65590	DOF	AtDof5,7	Dof-type zinc finger DNA-bindi...		Lus10035955 [exp]	1.0	0.9522
AT3G26660	AS2	LBD24	LOB domain-containing protein ...		Lus10009567 [exp]	6.0	0.9465
AT5G13150		ATEXO70C1	exocyst subunit exo70 family p...		Lus10011334 [exp]	7.9	0.9271
AT1G48130		ATPER1	1-cysteine peroxiredoxin 1 (.1...		Lus10017112 [exp]	8.1	0.8738
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10039362 [exp]	8.7	0.9336
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10040333 [exp]	11.7	0.9350
AT5G07280		EXS, EMS1	EXTRA SPOROGENOUS CELLS, EXCES...		Lus10014996 [exp]	13.4	0.9356
AT4G30610		SCPL24, BRS1	SERINE CARBOXYPEPTIDASE 24 PRE...		Lus10019954 [exp]	14.9	0.8909
AT5G53950	NAC	ATCUC2, CUC2, A...	CUP-SHAPED COTYLEDON 2, Arabid...		Lus10041924 [exp]	18.2	0.9296
AT2G47940		EMB3117, DEGP2	EMBRYO DEFECTIVE 3117, DEGP pr...		Lus10005931 [exp]	20.4	0.9121

Compare expression of checked genes

Lus10025707 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.