Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38020 335 / 4e-115 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035953 [exp] 546 / 0 AT4G38020 374 / 2e-129 tRNA/rRNA methyltransferase (SpoU) family protein (.1) Lus10011129 [exp] 42 / 0.0007 AT2G19870 472 / 1e-161 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G147600 [exp] 343 / 4e-118 AT4G38020 335 / 5e-114 tRNA/rRNA methyltransferase (SpoU) family protein (.1) Potri.018G087800 [exp] 44 / 0.0001 AT2G19870 499 / 8e-171 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0098 [flax] [poplar] SPOUT PF00588 [flax] [poplar] SpoU_methylase SpoU rRNA Methylase family
Representative CDS sequence Show only first row Show all	>Lus10025709 pacid=23177553 polypeptide=Lus10025709 locus=Lus10025709.g ID=Lus10025709.BGIv1.0 annot-version=v1.0 ATGCACACACCTCTTGGACGCCGCCTTCACCAAGATAATGGCGACGGTGGCGATACTTTTACCAGCGACGATTTACTTACCGTTGAGAATTTCACACTAC CAGCCCATGTGAAGTCAATTACTAGCACTTCAAACCCATTTGTGAGGCACTGTGTCAAGCTCAGTCGCAGCTCCCCTTATCGTCATTCCCATGGCTCCAC TCTAGTCGTCGGCAGTACCCCTATCAGGGAGATTTGCAAGTTTCAAGAATCGCTGCGGGAAAGGACCTCCGAAATGGATTATTTATTCCTTCTTGATAAG GTTGTTCCCGCTGGTCTCCAAAGTTGCCCTGCTCGTACTCTGCGAGTGAGCGCTTTGGTGATGAAAAAGCTTTCACAAGTGCAATCCACGGAATCCATTG AAGCGATTGCTTTGATGAAGTTTCCTACTAGCTACTTTATTGCGGATGATGATCTAAGCTGTCGGAAGTGGTTCTCATCTCCCCATCGCATACTTGTTCT TGAAGGGATTCAGGATCCAGGTAACCTAGGGACGTTACTCAGATCTGCTGTGGCCTTTAAATGGGGTGGCATTTTCCTGCTTCCCGGGTGTTGCGATCCA TTCAATGGGAAAGCACTCCGAGCTAGCCGGGGAGCCTCATTCCAGGTTCCTATAGTTTCTGGTAGCTGGAAACATCTGCGAGCCCTGGTAAAGGAATTCA ATATGAAACTGTTAGCGGGCCAACCAGATACAGATGATGGATCAAGATCAGTATCGCATCTATCTCCAGGATTTGTCGATCCACTGGCTGATGTCCCGGT GTGTTTGGTTTTGGGGAACGAGGCACATGGCCTCACTAAAGAATCTCAACAAGCATGCAAGCTCGTGAGCATACCGATGGCAAAAGACTTTTGA
AA sequence Show only first row Show all	>Lus10025709 pacid=23177553 polypeptide=Lus10025709 locus=Lus10025709.g ID=Lus10025709.BGIv1.0 annot-version=v1.0 MHTPLGRRLHQDNGDGGDTFTSDDLLTVENFTLPAHVKSITSTSNPFVRHCVKLSRSSPYRHSHGSTLVVGSTPIREICKFQESLRERTSEMDYLFLLDK VVPAGLQSCPARTLRVSALVMKKLSQVQSTESIEAIALMKFPTSYFIADDDLSCRKWFSSPHRILVLEGIQDPGNLGTLLRSAVAFKWGGIFLLPGCCDP FNGKALRASRGASFQVPIVSGSWKHLRALVKEFNMKLLAGQPDTDDGSRSVSHLSPGFVDPLADVPVCLVLGNEAHGLTKESQQACKLVSIPMAKDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38020			tRNA/rRNA methyltransferase (S...		Lus10025709 [exp]	0	1
AT1G12410		EMB3146, CLP2, ...	NUCLEAR-ENCODED CLP PROTEASE P...		Lus10028905 [exp]	2.6	0.8617
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10009475 [exp]	6.5	0.8168
AT4G28950		ATRAC7, ARAC7, ...	Arabidopsis RAC-like 7, RHO-re...		Lus10034932 [exp]	13.1	0.8412
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10032458 [exp]	14.7	0.8185
AT3G10140		RECA3	RECA homolog 3 (.1)		Lus10042033 [exp]	15.9	0.8168
AT2G22560			Kinase interacting (KIP1-like)...		Lus10025717 [exp]	16.5	0.8145
AT2G44150		SDG7, ASHH3	SET DOMAIN-CONTAINING PROTEIN ...		Lus10039118 [exp]	18.2	0.8021
					Lus10022823 [exp]	18.3	0.8057
AT5G57410			Afadin/alpha-actinin-binding p...		Lus10015526 [exp]	21.4	0.8176
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Lus10018724 [exp]	22.3	0.7803

Compare expression of checked genes

Lus10025709 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.