Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22590 473 / 2e-164 UDP-Glycosyltransferase superfamily protein (.1) AT5G49690 389 / 9e-132 UDP-Glycosyltransferase superfamily protein (.1) AT5G65550 385 / 4e-130 UDP-Glycosyltransferase superfamily protein (.1) AT5G54010 213 / 1e-63 UDP-Glycosyltransferase superfamily protein (.1) AT1G64910 209 / 2e-62 UDP-Glycosyltransferase superfamily protein (.1) AT5G54060 206 / 6e-61 UF3GT UDP-glucose:flavonoid 3-o-glucosyltransferase (.1) AT3G29630 203 / 6e-60 UDP-Glycosyltransferase superfamily protein (.1) AT5G53990 203 / 6e-60 UDP-Glycosyltransferase superfamily protein (.1) AT1G64920 201 / 2e-59 UDP-Glycosyltransferase superfamily protein (.1) AT2G22930 201 / 3e-59 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035951 [exp] 859 / 0 AT2G22590 464 / 3e-161 UDP-Glycosyltransferase superfamily protein (.1) Lus10012726 [exp] 549 / 0 AT2G22590 471 / 3e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10027850 [exp] 360 / 2e-120 AT5G49690 560 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10003154 [exp] 239 / 2e-73 AT5G54010 318 / 3e-104 UDP-Glycosyltransferase superfamily protein (.1) Lus10008453 [exp] 232 / 8e-71 AT5G54010 539 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10043445 [exp] 217 / 5e-65 AT5G65550 225 / 3e-68 UDP-Glycosyltransferase superfamily protein (.1) Lus10042242 [exp] 204 / 4e-62 AT5G65550 280 / 9e-92 UDP-Glycosyltransferase superfamily protein (.1) Lus10040178 [exp] 202 / 3e-59 AT5G54010 437 / 7e-151 UDP-Glycosyltransferase superfamily protein (.1) Lus10013337 [exp] 198 / 5e-58 AT5G54010 452 / 1e-156 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G034100 [exp] 486 / 1e-169 AT2G22590 505 / 2e-177 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G030600 [exp] 467 / 4e-162 AT2G22590 537 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G182575 [exp] 435 / 1e-149 AT5G49690 468 / 7e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.003G184400 [exp] 394 / 1e-133 AT5G49690 549 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.014G088400 [exp] 386 / 4e-130 AT2G22590 374 / 4e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.002G162300 [exp] 373 / 2e-125 AT2G22590 372 / 6e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G042800 [exp] 358 / 7e-120 AT5G49690 377 / 3e-127 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G179700 [exp] 246 / 2e-76 AT5G54010 349 / 2e-116 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G182650 [exp] 229 / 3e-72 AT5G65550 254 / 4e-82 UDP-Glycosyltransferase superfamily protein (.1) Potri.011G097900 [exp] 232 / 5e-71 AT5G54010 498 / 1e-174 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10025711 pacid=23177522 polypeptide=Lus10025711 locus=Lus10025711.g ID=Lus10025711.BGIv1.0 annot-version=v1.0 ATGGCGAGTACTACTAATAACAAGTCCCTCCACATAGCAATGTTCCCATGGCTAGCCTTCGGTCACATCCTCCCATTCCTCCAGCTCGCCAAGCTCATCG CTCAACGAGGCCACCTCATCTCCTTCATTTCCACTCCGCGCAACATCGACCGCCTCCCTAAACTCCCTCCCGCACTATCCTCGCTCATCACATTCGTCAA GCTCCCACTCCCTTCCTCCGACGTCCAAGGTCTCCCACACGCGGCGGAAGCCACCTCCGACTTGGAAGCTCGCCACGTTGGCTATCTCAAGAGAGCTTAC GACCTTCTTCAGCACCAACTCTCCACCTTCCTCCAATCTTCCAATCCCGATTTCATCATCTGCGACTATGCTCCCTTCTGGCTTCCCCCCATAGCTCGCC GGTTGGGAATCCCAACTGTGTTTTTCAGCATCTTTATAGCCTCTGTATTAGCGTTCACCAGCCCCCCAGCCGATGATGAAGACGAAGATTATCGGAAAAC AGTCGAGGACCTCACGGAGAAGCCCAGGTGGGTCCCGTTTGAAACCACTTCAGGCTACTACAGGCCCTTCGAGGCTAAGGTGTCCTTCGAGATGGCGGTC GTCGGCGGCGGTGGACAGGAATTCCCGGAGTTGCACCGCTTTCGGCAGATGTTGAGAGGATGCGATTTCGTCGCGGTCAGAACCTGCCCGGAACTAGAAC ACGATTGGCTTAAGCTTCTAGAACAAATACACAAGAAGCCCGTTTTCCCCATAGGCGTGCTTCCCAATCCCATCAAGGAGGAGGACGAAGAAGGAGATGA GGACACGTGGAAGTCGATCAAAGAGTGGCTGGACGACGGGAAGGAAAAAGGTTCGGTGGTGTACGTTGCTTTCGGGAGCGAGGCGATACCCAGCCAGGAA GAGCTGACGGAGATAGCCACCGGGTTGGAGCTTTCTGGGCTGCCTTTCTTCTGGGTGCTCCGGAGCTCCGATGATCCTCGTCGTGAGCTTCCGGAAGGGT TCGAGGAGCGGACGGCGGGAAGAGGATTGGTGTGGAAAGGGTGGGCCCCACAGGTGAAGATTCTGGGACACGAATCGGTAGGGTGCATGTTCTGTCATTC TGGTTGGAGCTCGGTGGTCGAGGCTCTTCAATTTGGTCGCCCGCTTGTTTTGTTGACTTTTTACGCTGACCAAGGGCTGAATTCCAAGCTGCTCCAAGAG AAAGGTTTGGGGTACTTGGTTCCGAGGAACGACGACGACGGGCGGTTCAGGAGAGAGTCGGTGGCTGAGTCGCTAAGGACGGTGATGTTGGCGGAGGAAG GGCAGAGTGGTCATAGAGAGAAAGCTGCAGAGATGCAAACGTTGTTCGCTGACACGGAGAAGCATGAGAGTTATGTCCATGATTTCCTTAGCAGCCTTGT TCAAGCGCTTGATTAG
AA sequence Show only first row Show all	>Lus10025711 pacid=23177522 polypeptide=Lus10025711 locus=Lus10025711.g ID=Lus10025711.BGIv1.0 annot-version=v1.0 MASTTNNKSLHIAMFPWLAFGHILPFLQLAKLIAQRGHLISFISTPRNIDRLPKLPPALSSLITFVKLPLPSSDVQGLPHAAEATSDLEARHVGYLKRAY DLLQHQLSTFLQSSNPDFIICDYAPFWLPPIARRLGIPTVFFSIFIASVLAFTSPPADDEDEDYRKTVEDLTEKPRWVPFETTSGYYRPFEAKVSFEMAV VGGGGQEFPELHRFRQMLRGCDFVAVRTCPELEHDWLKLLEQIHKKPVFPIGVLPNPIKEEDEEGDEDTWKSIKEWLDDGKEKGSVVYVAFGSEAIPSQE ELTEIATGLELSGLPFFWVLRSSDDPRRELPEGFEERTAGRGLVWKGWAPQVKILGHESVGCMFCHSGWSSVVEALQFGRPLVLLTFYADQGLNSKLLQE KGLGYLVPRNDDDGRFRRESVAESLRTVMLAEEGQSGHREKAAEMQTLFADTEKHESYVHDFLSSLVQALD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22590			UDP-Glycosyltransferase superf...		Lus10025711 [exp]	0	1
AT4G25330			unknown protein		Lus10006358 [exp]	1.4	0.8762
AT3G15115			unknown protein		Lus10013678 [exp]	5.5	0.8506
AT3G12620			Protein phosphatase 2C family ...		Lus10019893 [exp]	6.6	0.8677
AT3G47640	bHLH	PYE, bHLH047, P...	POPEYE, basic helix-loop-helix...		Lus10008622 [exp]	6.9	0.8194
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10012893 [exp]	15.1	0.8306
AT1G06930			unknown protein		Lus10034209 [exp]	17.7	0.8031
AT1G71970			unknown protein		Lus10017920 [exp]	22.8	0.7605
AT2G40230			HXXXD-type acyl-transferase fa...		Lus10007509 [exp]	27.2	0.7747
AT5G38790			unknown protein		Lus10003044 [exp]	27.7	0.7673
AT2G41475			Embryo-specific protein 3, (AT...		Lus10019416 [exp]	31.6	0.7690

Compare expression of checked genes

Lus10025711 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.