Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65540 436 / 2e-147 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035950 [exp] 920 / 0 AT5G65540 541 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G011800 [exp] 565 / 0 AT5G65540 534 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF07524 [flax] [poplar] Bromo_TP Bromodomain associated
Representative CDS sequence Show only first row Show all	>Lus10025712 pacid=23177622 polypeptide=Lus10025712 locus=Lus10025712.g ID=Lus10025712.BGIv1.0 annot-version=v1.0 ATGTCCATCCTCGGCGACGACGGTCGCGGCTTCGAGCTTGCCCGGAAACTTGAGTCCATCGGCGTGTGGAGGACATGGTTGGGCGACGCTCTCTACTACA GTTTTGTTCAGTTCCTTTCTTCTCCTTCCTCCTGTGAGTCTTTCATGAGAACCGACGAGCTCAAGTCCAAAGCTCAGATCCACCTCCAGCTCCGCACCCG CGCTCTTCTCTTCGACAAAGCTAGCGTCTCCCTTTTTCTCAAGTCCACTAACAATCCCTCCCCTTCCGCAGCGGTTTCCAAACTTAATCCCAATTTATAT TTGCAGTTACATGGCGACGATGTGTATTACACTCTAGAGGACATGGATCAACGAAGAGATGGTGGCGGTGGAGGTGTTGGGACTACTGTGCCGTCATCTT GGACTCATCCTAGATCTGCCTTTTCTACTGGAGCAAGATATGGGAAGCATAAAAGTAACAGGCTATTTAAGATGCCCCTTGGGGATAGAGAGACAGAGAA ACGTTCTCCTGAAATTATGTCTAATTATCTTAAGCTTCGGGACAAGCATAAAAGAAGCCGCGTTACGTTTAAGCAAGAAAGCACATCAGGCTTGCATCCC GACTCTGGTTTAGATTGCCGAAGCTCAGTTGATGATGGTGTGTCTTTCTTTCCTGAAGTAATGTTTACGTCAAATTGTGTACCAGATAGTGCATTACCTC CTATTGTTAGAGCCCAGGACAACAACAAACTTGAGTTTCGTGGGGTTCTTGACTCATTGCCTCAGGCCAGGAATGCTGTAATGATAGAGAGGCTTGGCAT CAGTGTGGAACAGGGAGAAAGCTTCCATCGTAGGAAAAGTGGGTCCGGCGGGAACATAAAAACTCTTAGTCAAGAACAGGCACTGCAAATGTCGAAAAAG GTAGTTGCCCTTATGTTGAATCGAGTGGCTTTTGATAGTGCTTCAGAGGCTTCAGTGGAAGTCTTCTCTCAACTGTTTGGGTGTCATCTAAGTAAATTAG GCCACACATTGAGAGTTCTTGCTGACAGTTATCGGAAGCAGTGTTCAGCTATTGAGTTAATTAAGATGTTTCTTCAGACTGCGGGACACAGCAACGTTGG ATCTTTAATGGAGGTCGTCAAGGATGGCATGGCAAGACAAACACATCCACAGATGCAACAGATGATGCATCCTCAAGGTTTGAGTTTCCATCACCAGCAA CAGTTGCACAGACGACAACAACAGTCAGCCCCTCGCCCTAGTATGGATGCGGAGAAGGAAAGACACACGGCAATGGTGCAAGTGAAGGTTGAAAGTGCAC CAGATTTGCCATTGGATAACAATGCATATAATAATAATGCCATGCACGGGAGACATCCACAAATGCAATTCCGGCAGCAACAACTTGCTGCAATGTCAAA TCTGCATGCACATTCCGGGAATCAGCTTAGGCAGTTTGCTGCTTCATTACAAGTTCCTCAAGTGCATTCACCGAACATGGGTATGGCAAGGGCTCCTCCA GTAAAGGTTGAAGGTTTTCAGGAGTTGATGGGAGGGGGTGGTACGTTGAAGCACGAGTCTGAAGATAGCATCAAGCTAACATCAAAGACATTGTCGTAA
AA sequence Show only first row Show all	>Lus10025712 pacid=23177622 polypeptide=Lus10025712 locus=Lus10025712.g ID=Lus10025712.BGIv1.0 annot-version=v1.0 MSILGDDGRGFELARKLESIGVWRTWLGDALYYSFVQFLSSPSSCESFMRTDELKSKAQIHLQLRTRALLFDKASVSLFLKSTNNPSPSAAVSKLNPNLY LQLHGDDVYYTLEDMDQRRDGGGGGVGTTVPSSWTHPRSAFSTGARYGKHKSNRLFKMPLGDRETEKRSPEIMSNYLKLRDKHKRSRVTFKQESTSGLHP DSGLDCRSSVDDGVSFFPEVMFTSNCVPDSALPPIVRAQDNNKLEFRGVLDSLPQARNAVMIERLGISVEQGESFHRRKSGSGGNIKTLSQEQALQMSKK VVALMLNRVAFDSASEASVEVFSQLFGCHLSKLGHTLRVLADSYRKQCSAIELIKMFLQTAGHSNVGSLMEVVKDGMARQTHPQMQQMMHPQGLSFHHQQ QLHRRQQQSAPRPSMDAEKERHTAMVQVKVESAPDLPLDNNAYNNNAMHGRHPQMQFRQQQLAAMSNLHAHSGNQLRQFAASLQVPQVHSPNMGMARAPP VKVEGFQELMGGGGTLKHESEDSIKLTSKTLS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65540			unknown protein		Lus10025712 [exp]	0	1
AT2G39630			Nucleotide-diphospho-sugar tra...		Lus10005164 [exp]	1.7	0.9255
AT3G21480			BRCT domain-containing DNA rep...		Lus10038633 [exp]	3.5	0.9084
AT5G63280	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10014794 [exp]	3.5	0.9122
AT4G12010			Disease resistance protein (TI...		Lus10019654 [exp]	3.9	0.9050
AT5G19840			2-oxoglutarate (2OG) and Fe(II...		Lus10000493 [exp]	6.3	0.9082
AT2G20410			RNA-binding ASCH domain protei...		Lus10014656 [exp]	6.5	0.8844
AT4G34020		AtDJ1C	DJ-1 homolog C, Class I glutam...		Lus10014067 [exp]	6.7	0.8898
AT5G44090			Calcium-binding EF-hand family...		Lus10003628 [exp]	8.8	0.9017
AT1G80150			Tetratricopeptide repeat (TPR)...		Lus10019119 [exp]	9.5	0.8994
AT3G54980			Pentatricopeptide repeat (PPR)...		Lus10019524 [exp]	9.9	0.8988

Compare expression of checked genes

Lus10025712 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.