Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65530 447 / 1e-155 Protein kinase superfamily protein (.1) AT5G10520 440 / 2e-152 RBK1 ROP binding protein kinases 1 (.1) AT5G18910 343 / 4e-114 Protein kinase superfamily protein (.1) AT3G05140 298 / 5e-97 RBK2 ROP binding protein kinases 2 (.1) AT5G35960 289 / 6e-94 Protein kinase family protein (.1) AT2G18890 265 / 5e-85 Protein kinase superfamily protein (.1.2) AT5G57670 257 / 9e-80 Protein kinase superfamily protein (.2) AT1G77280 227 / 9e-67 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G21590 216 / 9e-63 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G52290 206 / 7e-61 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035949 [exp] 798 / 0 AT5G65530 521 / 0.0 Protein kinase superfamily protein (.1) Lus10012727 [exp] 495 / 3e-172 AT5G65530 457 / 8e-157 Protein kinase superfamily protein (.1) Lus10034000 [exp] 327 / 1e-105 AT5G18910 568 / 0.0 Protein kinase superfamily protein (.1) Lus10012776 [exp] 325 / 4e-105 AT5G18910 568 / 0.0 Protein kinase superfamily protein (.1) Lus10018959 [exp] 293 / 1e-94 AT3G05140 512 / 8e-180 ROP binding protein kinases 2 (.1) Lus10008192 [exp] 280 / 5e-90 AT5G35960 489 / 4e-172 Protein kinase family protein (.1) Lus10019990 [exp] 273 / 3e-85 AT5G57670 628 / 0.0 Protein kinase superfamily protein (.2) Lus10006957 [exp] 257 / 2e-82 AT2G18890 459 / 1e-162 Protein kinase superfamily protein (.1.2) Lus10002658 [exp] 225 / 1e-72 AT3G05140 106 / 1e-27 ROP binding protein kinases 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G011700 [exp] 534 / 0 AT5G10520 552 / 0.0 ROP binding protein kinases 1 (.1) Potri.013G028100 [exp] 315 / 3e-103 AT3G05140 548 / 0.0 ROP binding protein kinases 2 (.1) Potri.010G027301 [exp] 312 / 2e-101 AT5G18910 527 / 0.0 Protein kinase superfamily protein (.1) Potri.014G136300 [exp] 306 / 1e-100 AT5G35960 556 / 0.0 Protein kinase family protein (.1) Potri.006G173700 [exp] 280 / 2e-88 AT5G57670 654 / 0.0 Protein kinase superfamily protein (.2) Potri.018G096100 [exp] 278 / 1e-87 AT5G57670 619 / 0.0 Protein kinase superfamily protein (.2) Potri.018G091200 [exp] 261 / 2e-83 AT2G18890 469 / 8e-166 Protein kinase superfamily protein (.1.2) Potri.006G166600 [exp] 260 / 4e-83 AT2G18890 463 / 3e-163 Protein kinase superfamily protein (.1.2) Potri.007G102400 [exp] 232 / 4e-69 AT5G63940 722 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G077900 [exp] 229 / 6e-68 AT1G77280 797 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10025713 pacid=23177524 polypeptide=Lus10025713 locus=Lus10025713.g ID=Lus10025713.BGIv1.0 annot-version=v1.0 ATGGATAGGGACTTCATCCTGGATGATTCCTCCTGTGTTATGGAGGTTCCAATCTTAGGAGGTTCAGACCCTGATCATTCTACCAGTTCCACAGGTTCTT GTAGCTTGTCAGAGAGTCTTCCGGCCCCAGATAGAGACACAGACAACACAGAAACAGAACTTGACGGCAACCAATGGAAATCCATGTTTGACACCATCAA AAAGAAATCAGCGAGGAGGTTCTCAGTCATCCCACTGCTCACAACCTACGAAGTTATCTCCAAGAAGAATATAAGGAAGAAGCTGTCCAAGATTAGGAAC CCTGGTGATGTTGTCATTGATTATGATGGCATCCCTGTTCCTAAACCTTCTTGGAGGAACTTTGATTTCAGGGAGCTTGCTGCAGCTACCGGTGATTTTA GCTACGATAACTTGATCGGGAAAGGGGGTCATGCTGAAGTTTATAGAGGGCAGTTGTCGGATGGCCAAGTTGTAGCTGTAAAGAAGATAATAAAGGCTGA GAAGCAAGATGAAGACCTAATAGCTGACTTCTTGTCAGAGCTTGGAATAATTGCACATATTAACCACCCTAACGCGGCTAGACTTATAGGCTTCAGCATT GATTGTGGTTTGCATCTTGTGCTAGAGTTTCTACCACATGGCAGCCTTGCCAATAAGCTCCACGGCTCAGACGGGTTTCTAGACTGGGAAAAGAGGTACA AAGTAGCTTTAGGAACTGCAGAAGGTCTAAGGTATCTTCATCATGATTGCCCTAGACGTATCATCCACCGAGATATAAAAGCATCAAACATCTTGCTTGG TGAAGATTATGAAGCTCAAGTGAGATACCTGGCTCCAGAGTACTTCATGCACGGAGTAGTTGATGAAAAGACCGATGTATTTGCTTTTGGAGTTCTGTTA CTGGAGATCATAACCGGTCGCCATGCAGTTGATTCTACTAGGCAAAGCCTTGCCATGTGGGCAAAACCATTGTTGGAAGAAAACAAGGTGAGTACATTGG TAGATCCGAGATTAGGAAATGATTTCGATCCAATAGAGATGAAACGAGCAATGGTCACAGCATTTCTGTGCATAGACCATGTATCCAAGATGCGGCCTTC CATGACTCGGGTAGTGCAATTACTGAGCGGGGATGATGTGGCGATTGATATGGTGATGATACAGAAAACAAGCTCAGGGAGGGCAGTGATCTTGGATGCT AGTGACTTGCAAGACTACACGTGTACTAACTACCTTAACGACCTTAACCGTCATATGCAGCTTGTGATGGAATGA
AA sequence Show only first row Show all	>Lus10025713 pacid=23177524 polypeptide=Lus10025713 locus=Lus10025713.g ID=Lus10025713.BGIv1.0 annot-version=v1.0 MDRDFILDDSSCVMEVPILGGSDPDHSTSSTGSCSLSESLPAPDRDTDNTETELDGNQWKSMFDTIKKKSARRFSVIPLLTTYEVISKKNIRKKLSKIRN PGDVVIDYDGIPVPKPSWRNFDFRELAAATGDFSYDNLIGKGGHAEVYRGQLSDGQVVAVKKIIKAEKQDEDLIADFLSELGIIAHINHPNAARLIGFSI DCGLHLVLEFLPHGSLANKLHGSDGFLDWEKRYKVALGTAEGLRYLHHDCPRRIIHRDIKASNILLGEDYEAQVRYLAPEYFMHGVVDEKTDVFAFGVLL LEIITGRHAVDSTRQSLAMWAKPLLEENKVSTLVDPRLGNDFDPIEMKRAMVTAFLCIDHVSKMRPSMTRVVQLLSGDDVAIDMVMIQKTSSGRAVILDA SDLQDYTCTNYLNDLNRHMQLVME

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65530			Protein kinase superfamily pro...		Lus10025713 [exp]	0	1
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10043046 [exp]	1.4	0.9368
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10040365 [exp]	8.1	0.9227
AT5G07130		LAC13	laccase 13 (.1)		Lus10042251 [exp]	8.5	0.9064
AT1G02260			Divalent ion symporter (.1)		Lus10027497 [exp]	9.5	0.9146
AT1G68710			ATPase E1-E2 type family prote...		Lus10035068 [exp]	10.9	0.9260
AT3G11550		CASP2	Casparian strip membrane domai...		Lus10021333 [exp]	14.1	0.9229
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10007248 [exp]	15.6	0.9237
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10006978 [exp]	15.8	0.9143
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10036251 [exp]	17.9	0.9208
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10009502 [exp]	20.9	0.8838

Compare expression of checked genes

Lus10025713 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.