Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65500 566 / 0 U-box domain-containing protein kinase family protein (.1) AT2G45910 205 / 3e-55 U-box domain-containing protein kinase family protein (.1) AT5G57035 204 / 3e-55 U-box domain-containing protein kinase family protein (.1) AT5G61560 201 / 4e-54 U-box domain-containing protein kinase family protein (.1.2) AT3G49060 196 / 3e-52 U-box domain-containing protein kinase family protein (.1.2) AT5G61550 194 / 1e-51 U-box domain-containing protein kinase family protein (.1.2) AT5G51270 192 / 6e-51 U-box domain-containing protein kinase family protein (.1) AT4G25160 191 / 2e-50 U-box domain-containing protein kinase family protein (.1) AT2G19410 189 / 3e-50 U-box domain-containing protein kinase family protein (.1) AT5G26150 134 / 2e-32 protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035947 [exp] 1233 / 0 AT5G65500 625 / 0.0 U-box domain-containing protein kinase family protein (.1) Lus10014772 [exp] 207 / 1e-55 AT3G49060 901 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10036362 [exp] 206 / 3e-55 AT3G49060 895 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10027490 [exp] 201 / 5e-54 AT3G49060 514 / 2e-171 U-box domain-containing protein kinase family protein (.1.2) Lus10016557 [exp] 197 / 1e-52 AT2G45910 508 / 3e-168 U-box domain-containing protein kinase family protein (.1) Lus10036363 [exp] 194 / 4e-52 AT2G45910 528 / 9e-178 U-box domain-containing protein kinase family protein (.1) Lus10039245 [exp] 195 / 9e-52 AT3G49060 556 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10040825 [exp] 191 / 2e-50 AT2G45910 496 / 1e-163 U-box domain-containing protein kinase family protein (.1) Lus10026439 [exp] 139 / 5e-34 AT5G12000 662 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G011500 [exp] 488 / 3e-163 AT5G65500 575 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.002G160300 [exp] 207 / 1e-56 AT2G45910 559 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.002G160200 [exp] 207 / 6e-56 AT2G45910 650 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.014G084900 [exp] 203 / 2e-54 AT2G45910 857 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.012G143100 [exp] 195 / 5e-52 AT3G49060 706 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Potri.004G233000 [exp] 186 / 5e-49 AT4G25160 874 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.001G239100 [exp] 185 / 5e-49 AT2G45910 473 / 6e-156 U-box domain-containing protein kinase family protein (.1) Potri.006G147000 [exp] 184 / 2e-48 AT5G57035 674 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.009G030400 [exp] 183 / 5e-48 AT2G45910 398 / 5e-126 U-box domain-containing protein kinase family protein (.1) Potri.006G078500 [exp] 130 / 7e-31 AT2G24370 824 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10025715 pacid=23177683 polypeptide=Lus10025715 locus=Lus10025715.g ID=Lus10025715.BGIv1.0 annot-version=v1.0 ATGGATTCTCAAGTGGAGAGTAAGAGTAGTATTCGAAAAGTGTATGTAGCTGTGGGGAATGATAGGGATGAAGGATTGAAGACTCTTGATTGGGTTCTGA CAAAATGGAAATCAAACATCTCAACTCTTTTCATTCTTTACCTGCCTCTTCCAGATTTCTCCACCGATATTGTCCACACCCTCTATGGGAAGCTGCCGGC GACTTCAATGAGCGAGGAGAAACTGCAAGCTGTGAGGAAGTACGAGGAGAAGAAAAACGAGAAGCTTGTGCCGGAGTACATAGGTTATTGCGCTGCCAAG GGAGTGAAAGCAAAAGGGGTGAAAGTGGAGAAGACGGAAGAGACAATTGAGAAGGTGATGGTGGATCTGATTTCAAAGCTCAGAGTGTCCATTCTTGTCA TGGGAATTTCATTTCTCAAGGCATCCCCTTCCTGGAAGAAAAGCAAGAACACGATAGGAGCTGTCTTTTACATGGTGGAAAATAGACCAAGGGGTTGCAA GATGTTCATAGTATGTGGAGGGAGATTAGTGATGATGAAAGGAGGAGATGGAGAGAAGGAGGATGAAGGAAATTCAATTCCATATTTGATGAATTGTTCC AGTAATGCTTCATCTTCATCATCATTATCATGGCTTGGAAGATTGTTCAGCAGCAGGACTAACAGCAACAATGATAATAAGCGTCCTTCTTCGGCAGGGG AGGGCAGTAGGGATTGCTGGGAAGCTGAGATCATGGAGATGTATTTGCAGGAGTTGTTGCTCATGGCTCCTCCTTCTCCTCCTCCTAATCCTGATTTGGG TCAACAGCAGCTAGCTGAACTTCATGACCAAACTGATCATCTTCTGCAACAGCTTTCCAATCCCAATCTGAGTGGTGCAGAAAAAACAGAGATGGTGAGA AGCAAAATAAAAGAAGCTTGGAAAGCAATGGAGTTGAAGAGAGAAGAAGCGGAGGATAATGCTGAAAGATGTGCAAAAGCTGATTGGGCAATCTCACTTT GCAACTCCCGGGTTGCGGAGCTGGAATCAAAGATTACAGAAGAGGCAATGATGCGCAGCGAGATGTCGAAAAAGTTAGAAGCGGACAGAGAACGGTCTCA GGAGCTGAAAAATGACATCGGGGAAACCAAAAACAAAGTGGATTCGATCATGGAGCTTCAATCTGAGCTCTCAGACAGATTACAACTCTCAATGACTGCG AGATCCCACGCGGAGGTTCAACTTCAGAAGTCGGCGGAAGCAAGAGCTGAGGTGGTTAGAGAGATGGAAGAATTAAGGCGGCAGAGGGATGTTCTTCGCC GTAGGATTGACTTCTGCAAAGAGAAAGACGCCATTGGGATGGTGATGAACTCTGGCCTGCACGATATTAGTTATAGAGAGTACACTGCTCAGGATATCCG ATCGGCCACTGATGGCTTCTCCGATTACCTCAGGTTGAAATCCGGCGGTGATGGGAGGAGCAATGTGTATCGTGGACGCATTAGTCACAATACTGTTGCT ATCAAGTTATTCGGAGCTGAGCACAAATTGTCAAACGAAGCTGCTTTTTTGGGTCAGGTGAAGTTCCTGAGCAGCGTTAGGCACCCACATTTGGTTGCCC CGATGGGATTCTGCACCGAGCTGAAATGCGTCGTTTTCGAGTATATGCACCAAGGTAGCCTAAAGCACAATTTGCTGAATAGTAATAGCAGCTCCCAATC CGACTCTGGTTCCCCGAATCAGACTCTCAAGTGGCACCATCGGATCCGAGTGGCTCATCAAGTATGCTCCGCATTAGCGTTTCTCCATTCGGCTAAGCCC AACCCTATCGTTCACGGCAAACTCACTGTGTCGAAGATCCTTCTTGACCGAAATATGGTTCCCAAATTATGTGGGTTGAAACCAACATGTTCTTCGTCAG ATGCCCGGTCCGACATTCGAGCTCTTGGAGTCATCTTGCTTCATCTCTTGACGGGGAGAAAATGGGGGGAGCTGGTTGATGATAGGATGAGTTGTGACAG GTCAGCTTTGGTTGAGGTGTTGGATGATGAGATGGATGGACCTTGGCCATTGGATATGGCTGATGAGCTTGCCGGAATTGCAATGAGGTGCTTGTCATTG TCCCGTTTGGCTGCAGCAGATTTGAGCATTGCTCAAGTGCTTCAAGAGCTGCAGGATTTGAGGAAAAAGAGTGACGATCTGGTTGTTAAATTTGGGCGTC AGGTCATCACATCTTCGAGTAGAGCTTCTGAAAATGATGACGACACTTCTGCTGATATTCCTAGCTTCTTCATTTGCCCAATACTCAAGGATGTGATGGA GAATCCTCATGTAGCTGAAGATGGGTTTTCGTATGAGCTAGAAGCTATGGAGCAATGGCTACAGACAGGGCGGGATACCTCGCCAATGACGAACTTAAGC CTTAACCACACCTTCTTGATCCCTAATCGCACCCTTCGTTCGCTCATCGCAGATTGGCATAGCCAGAGGAACCCTGTGCCTTCATCATCTTGA
AA sequence Show only first row Show all	>Lus10025715 pacid=23177683 polypeptide=Lus10025715 locus=Lus10025715.g ID=Lus10025715.BGIv1.0 annot-version=v1.0 MDSQVESKSSIRKVYVAVGNDRDEGLKTLDWVLTKWKSNISTLFILYLPLPDFSTDIVHTLYGKLPATSMSEEKLQAVRKYEEKKNEKLVPEYIGYCAAK GVKAKGVKVEKTEETIEKVMVDLISKLRVSILVMGISFLKASPSWKKSKNTIGAVFYMVENRPRGCKMFIVCGGRLVMMKGGDGEKEDEGNSIPYLMNCS SNASSSSSLSWLGRLFSSRTNSNNDNKRPSSAGEGSRDCWEAEIMEMYLQELLLMAPPSPPPNPDLGQQQLAELHDQTDHLLQQLSNPNLSGAEKTEMVR SKIKEAWKAMELKREEAEDNAERCAKADWAISLCNSRVAELESKITEEAMMRSEMSKKLEADRERSQELKNDIGETKNKVDSIMELQSELSDRLQLSMTA RSHAEVQLQKSAEARAEVVREMEELRRQRDVLRRRIDFCKEKDAIGMVMNSGLHDISYREYTAQDIRSATDGFSDYLRLKSGGDGRSNVYRGRISHNTVA IKLFGAEHKLSNEAAFLGQVKFLSSVRHPHLVAPMGFCTELKCVVFEYMHQGSLKHNLLNSNSSSQSDSGSPNQTLKWHHRIRVAHQVCSALAFLHSAKP NPIVHGKLTVSKILLDRNMVPKLCGLKPTCSSSDARSDIRALGVILLHLLTGRKWGELVDDRMSCDRSALVEVLDDEMDGPWPLDMADELAGIAMRCLSL SRLAAADLSIAQVLQELQDLRKKSDDLVVKFGRQVITSSSRASENDDDTSADIPSFFICPILKDVMENPHVAEDGFSYELEAMEQWLQTGRDTSPMTNLS LNHTFLIPNRTLRSLIADWHSQRNPVPSSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65500			U-box domain-containing protei...		Lus10025715 [exp]	0	1
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10018992 [exp]	5.2	0.9326
AT5G23810		AAP7	amino acid permease 7 (.1.2)		Lus10010580 [exp]	5.6	0.9531
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036820 [exp]	11.0	0.9368
AT1G77920	bZIP		bZIP transcription factor fami...		Lus10031349 [exp]	15.7	0.9305
AT3G47570			Leucine-rich repeat protein ki...		Lus10020140 [exp]	16.4	0.9322
AT1G02305			Cysteine proteinases superfami...		Lus10010091 [exp]	17.2	0.9168
AT5G47900			Protein of unknown function (D...		Lus10010030 [exp]	17.7	0.9240
AT3G46540			ENTH/VHS family protein (.1)		Lus10040297 [exp]	21.3	0.9323
AT5G43540	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10033867 [exp]	23.0	0.9321
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10025899 [exp]	23.5	0.9035

Compare expression of checked genes

Lus10025715 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.