Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22560 415 / 3e-127 Kinase interacting (KIP1-like) family protein (.1) AT5G10500 334 / 1e-98 Kinase interacting (KIP1-like) family protein (.1) AT1G09720 301 / 3e-86 Kinase interacting (KIP1-like) family protein (.1) AT1G58210 254 / 5e-69 EMB1674 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) AT3G22790 115 / 2e-25 Kinase interacting (KIP1-like) family protein (.1) AT1G03080 106 / 7e-23 kinase interacting (KIP1-like) family protein (.1) AT4G14760 101 / 2e-21 kinase interacting (KIP1-like) family protein (.1) AT4G02710 100 / 8e-21 Kinase interacting (KIP1-like) family protein (.1) AT2G30500 84 / 2e-16 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) AT5G58320 83 / 4e-16 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035944 [exp] 1202 / 0 AT5G10500 280 / 3e-78 Kinase interacting (KIP1-like) family protein (.1) Lus10002655 [exp] 676 / 0 AT2G22560 511 / 9e-164 Kinase interacting (KIP1-like) family protein (.1) Lus10012730 [exp] 620 / 0 AT2G22560 430 / 9e-134 Kinase interacting (KIP1-like) family protein (.1) Lus10001866 [exp] 220 / 1e-59 AT1G58210 281 / 1e-80 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) Lus10032844 [exp] 219 / 4e-59 AT1G58210 280 / 4e-80 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) Lus10039359 [exp] 114 / 2e-25 AT3G22790 1402 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10006896 [exp] 106 / 8e-23 AT1G03080 927 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10014687 [exp] 104 / 3e-22 AT1G03080 938 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10041192 [exp] 96 / 1e-19 AT4G14760 744 / 0.0 kinase interacting (KIP1-like) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G011300 [exp] 476 / 2e-149 AT2G22560 851 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.005G147300 [exp] 470 / 2e-147 AT2G22560 421 / 2e-131 Kinase interacting (KIP1-like) family protein (.1) Potri.002G106400 [exp] 328 / 2e-95 AT1G58210 702 / 0.0 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) Potri.010G083300 [exp] 120 / 6e-27 AT3G22790 1306 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.008G156250 [exp] 113 / 1e-25 AT3G22790 519 / 7e-168 Kinase interacting (KIP1-like) family protein (.1) Potri.002G049600 [exp] 107 / 5e-23 AT1G03080 1229 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.005G213400 [exp] 106 / 7e-23 AT1G03080 1399 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.019G131000 [exp] 92 / 1e-18 AT2G30500 389 / 4e-129 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.013G158100 [exp] 90 / 4e-18 AT2G30500 384 / 7e-127 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.003G164200 [exp] 87 / 4e-18 AT1G03080 109 / 1e-26 kinase interacting (KIP1-like) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07765 [flax] [poplar] KIP1 KIP1-like protein
Representative CDS sequence Show only first row Show all	>Lus10025717 pacid=23177659 polypeptide=Lus10025717 locus=Lus10025717.g ID=Lus10025717.BGIv1.0 annot-version=v1.0 ATGTTGCAAAGAGCGGCGAGTAACGCATATTCATGGTGGGGGGGAAGCCACATAAGAACCAAACAATCAAAATGGCTGGAGCAAAATCTCCAAGATATGG AAGAAAAGGTGCACAGTGTAATAACATTGGTGTCAGAGGATGGAGATTCATTTGCAAAGAGGGCAGAAATGTACTACCAAAAAAGACCAGAAATCATCAG CTTCGTTGAGGAGGCTTACAGAGCTTACAGGGCATTAGCAGAGCGTTATGATCATATCTCTACAGAGCTTCAGAATGCCAACAACACCATAGCATATGTT TTCCCAGAGCAAGTTCAACTAGCTATGGAAGATGAGGATGACCTTCCTTCTCCAAGGTTCCTCAAGAAAGCATCTGCAGATCATCTCCCTAAAGGTAACA TCCCTAAAGTTCCCAAGCTCCCTAAGGAGATAAAGGGCATTATAGCATCTGCTACAAAGAAGCTACAACCAAAGAAATCAATCAAAGCAAGTTCAACTCC AGCTGCTTCAAAATCCGGTTTGACTAAACCTGAAGCGTTTAAGGAGATTGAGAAGCTTCAGAAACATGTCCTTGTTCTTCAGACTGAGAAAGAGTTTGTG AAAAGTAGTTATGAAAACGGCTTGTCCAAGTACTGGGAGATTGACGGCCAGATCCGGGAGATGCAGGATAAAGCATGTAGCTTGCAGGACGAGTTTGGTG CTGAGACGGTCATTGAAGACGATGAAGCTCGATCTGTGATGACTTCGGCTGCATTGAGATCTTGTCAAGAGACACTGGCTAAGTTGGAGGAAAGGCAAGA GAAGTCAGTAGAGGAAGCTAAAAAGGAAAGGAAAAGGATCAAAGAAGCTAAGGACAAACTCAAATCTCTTCTTCAACATTCTGATGAGACTTGTTCTGAT AAGGAAGCAACAGCAGCAGCAAAAGAAGAAGAAGATGATGAAGATTTTAGATCAGCTGAGCAGCAGCGGCAGGAAATCGAGGTGTTGAGAGAGAAGATAA AGAAGCATTTTGAGGCCAGTGCTGATGCATCCTTGACAGTGAGTGAAATGGCTGAGAAGATTGATGAGCTGGTCAACAAGGTGATTGGACTAGAAGCTGC AGTTTCTTCCCAGTCTGCTCTCATTCAGAGGATGAGAGCTGAAGCGGATGATCTCCATGGTCAGATTCAAAGTGTGGAAGAGAGTGGAAGCAAGGAGGTT TTGAATGAGAAGCTAGAAGAAATGGAAAGGAAGTTGGAAGAAATTGAGGAGATGAATGCAAGTGTTGAGGATCAAAGCACAAACCTGCAGACCAACTTCA TGGAGGCAAAGTGTAATCTTGATCATCTCTATCAGAAAATGGAGAATCTAAAGCCAGACGAGGAGGTTCAGACTCCTCCTCCTTCCGTGCAGCGGAAGAA AGCTCATAAGTTTGAATCACAGCCCTTTGTTAAAGGCAAAAACATTCGAAATGCTGTTGCTGAGTTTGACAATTCAATCAAAAAAGACAAAGAGAAGAGT GAAAAGGAGTTGAAGCAACAACAAGTAGCCGATGAGATTAGGCAAGCAAGAGAGGGTAGGAAGAAGGTCAAGAAGAAAGAGAAACCAAAGAAAGAAAAGA AAGTCGCAGATCAAGAATCTACACAAGTTGCAAAAGTTTCAGAAGAAGAATCTACACAAGTTGCAGATCAAGAAGCGGCGAATGATGCTGATATCAGGAC AACAAAACTAGAAAACAAGTTTACTCAAGTCCAGCAGCAGCAGCAACAGCAACAACAACAACAACAACAAGAACAAGAACAACAAGGACATGAAACTCAA GTTGAAGGAGGAGGAGAAGGAGGAAGAGATATTGATGTGAAGGCAGGAGAAGAAATTAGCCAGAGATCAAAGGAACAAGGAGACAAATCAGACCATCCTA GTTCGCTTGGTGCTATGTTGGGGATTGATAATGCCAATATGAATGAAGAAAGAAAAGAAGAAAATTTTGGCAGCTTGTTGGGAGATGGTTTAGACGACAA AGGATCTCAGTCTCTGAAGAAATATGACAGCTTGTTGGGAGATGGAACACAAGATAAGGTGGAAGCAGCTACAAAAACAGCAGTAGCAAATGCTACTGTT GAACAAAAACAAGGAATGAAGGTTGTAGATGATAGAGAAGACGCACCAAGACAGGTAAATGAACAAGTTGATGCATCGTCAAACCAGCCTGTCTCCCTTG CTAATGCCTTGGACAATACCAAACAGGAGGTGGATAATACCAAACAGGATCTTAGAAGCTTGTTGATGGATGATTCACAGAGTGGAGTTCAACCCGCAGT GACACAGCTCAACTCTTTAGAGAAGTCTAACATTGAGAAACCTATTGTGAAGCAGCAGGAATCTACAAAGGAATCTGAAAATCTTAGTGCTAGGACAGAA GAGAATGTTGCCGCACCTGAAAATCTTAGTGGTAATGTTTACGTTGAATCACAAGAAAATGCAGCAAGAAAAGATACATCTGATCTTACCCTCCAAGCAC AACAAAATGGAGCTGATGTAGGTGACGACAAGGTTAATGTTAAAGAAGAAGAAGAAAATAGAGCATCCACGCCAACTGTTGTTCATAGTGTTAAACCAGA TAATAATGATAGTGAAGATGATGATGACGATGAAGACGATGAGCCAGACTGGAAAGAACTATTCTTGAAAGGGGTGGATAATAGAGAACAAGTTCTTCTT ACAGAATACACCACCATTCTTCGAAACTTCAAAGAAGTTCAAAAGAAGCTCTCTGAAGCAGAAACCAAAGGAGGTGATAACCTGTTCGATATAACCGTTC AACTCAGAGAATTAAGGGCAGCCAATGCTAAGAAAGATGAACAGATTCGAGCTCTGCGCAAGAAACTCAGTCTCTTGCAAGCTGGAGATAATGATGACAA ACCTGAATCGCCATTCACAGTGGCTGATATATTACAAGATATAACTCTGGATCTAGAAGATGGCATTTCACCAGTTGAAGAGAGATTCCGATCAAGCATC GATGAACTTTTGGAGGATAACTTGGACTTTTGGCTAAGGTTTAGCACCACATTTCAACAGGTACAGCAATTTGAAACTGAAGTTAAAGACTTGCAATCTG AGTTGTCTGAGCTAGAGGATAAGCTGGGCAAGTACGAGGGAAGCAGCCATGGAAAATACAGTCTGACATCAGATGCAAAGCCATTGTACAAGCATCTAAG AGAGATCCACACTGAGCTAACAGTCTGGTTAGACAAGGGTATGCTGCTGAAAGATGAACTTAAAGGAAGATTTTCATCTTTGTGTGAAATTCAGGATGAA ATCACCGTAGCTCTAAAAGAGAGTGCAGAAGATGAAGATTTCAATTTTACAAGCTACCAGGCTGCGAAATTTCAAGGTGAAGTTCTGAATATGAAACAAG AGAATAACAAAGTTGCAGATGAATTGCAGGCAGGATTGGATCATGTAACCTCATTGCAACTTGAGGTTGACAGGACATTGGCTAAGTTGAACGAGGAATT CAAACTTTCTGGTTCTACTAAGAACCGTCAAAATATCGAGCTTCAACACTCAGAAAGTAGAGCTCGAGTTCCTTTGAGATCCTTCATTTTTGGAGTTAAA CCAAAAAAGCAAAAGCATTCAATTTTGTCAGTTGTCCATCCAGTACTTCAGAGGAAGTACAATGGTTTCAGATCAGGGCTAAATCTATAA
AA sequence Show only first row Show all	>Lus10025717 pacid=23177659 polypeptide=Lus10025717 locus=Lus10025717.g ID=Lus10025717.BGIv1.0 annot-version=v1.0 MLQRAASNAYSWWGGSHIRTKQSKWLEQNLQDMEEKVHSVITLVSEDGDSFAKRAEMYYQKRPEIISFVEEAYRAYRALAERYDHISTELQNANNTIAYV FPEQVQLAMEDEDDLPSPRFLKKASADHLPKGNIPKVPKLPKEIKGIIASATKKLQPKKSIKASSTPAASKSGLTKPEAFKEIEKLQKHVLVLQTEKEFV KSSYENGLSKYWEIDGQIREMQDKACSLQDEFGAETVIEDDEARSVMTSAALRSCQETLAKLEERQEKSVEEAKKERKRIKEAKDKLKSLLQHSDETCSD KEATAAAKEEEDDEDFRSAEQQRQEIEVLREKIKKHFEASADASLTVSEMAEKIDELVNKVIGLEAAVSSQSALIQRMRAEADDLHGQIQSVEESGSKEV LNEKLEEMERKLEEIEEMNASVEDQSTNLQTNFMEAKCNLDHLYQKMENLKPDEEVQTPPPSVQRKKAHKFESQPFVKGKNIRNAVAEFDNSIKKDKEKS EKELKQQQVADEIRQAREGRKKVKKKEKPKKEKKVADQESTQVAKVSEEESTQVADQEAANDADIRTTKLENKFTQVQQQQQQQQQQQQQEQEQQGHETQ VEGGGEGGRDIDVKAGEEISQRSKEQGDKSDHPSSLGAMLGIDNANMNEERKEENFGSLLGDGLDDKGSQSLKKYDSLLGDGTQDKVEAATKTAVANATV EQKQGMKVVDDREDAPRQVNEQVDASSNQPVSLANALDNTKQEVDNTKQDLRSLLMDDSQSGVQPAVTQLNSLEKSNIEKPIVKQQESTKESENLSARTE ENVAAPENLSGNVYVESQENAARKDTSDLTLQAQQNGADVGDDKVNVKEEEENRASTPTVVHSVKPDNNDSEDDDDDEDDEPDWKELFLKGVDNREQVLL TEYTTILRNFKEVQKKLSEAETKGGDNLFDITVQLRELRAANAKKDEQIRALRKKLSLLQAGDNDDKPESPFTVADILQDITLDLEDGISPVEERFRSSI DELLEDNLDFWLRFSTTFQQVQQFETEVKDLQSELSELEDKLGKYEGSSHGKYSLTSDAKPLYKHLREIHTELTVWLDKGMLLKDELKGRFSSLCEIQDE ITVALKESAEDEDFNFTSYQAAKFQGEVLNMKQENNKVADELQAGLDHVTSLQLEVDRTLAKLNEEFKLSGSTKNRQNIELQHSESRARVPLRSFIFGVK PKKQKHSILSVVHPVLQRKYNGFRSGLNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22560			Kinase interacting (KIP1-like)...		Lus10025717 [exp]	0	1
AT5G57410			Afadin/alpha-actinin-binding p...		Lus10015526 [exp]	1.7	0.9151
AT3G58100		PDCB5	plasmodesmata callose-binding ...		Lus10002193 [exp]	3.0	0.8517
AT5G01870			Bifunctional inhibitor/lipid-t...		Lus10025148 [exp]	4.7	0.8988
AT4G28950		ATRAC7, ARAC7, ...	Arabidopsis RAC-like 7, RHO-re...		Lus10034932 [exp]	6.5	0.8885
AT1G63260		TET10	tetraspanin10 (.1.2.3)		Lus10002230 [exp]	8.4	0.8541
AT1G17140		RIP1, ICR1	ROP INTERACTIVE PARTNER 1, int...		Lus10013708 [exp]	11.1	0.8764
AT1G62760			Plant invertase/pectin methyle...		Lus10031132 [exp]	12.3	0.8536
AT5G57410			Afadin/alpha-actinin-binding p...		Lus10019997 [exp]	15.1	0.8565
AT4G38020			tRNA/rRNA methyltransferase (S...		Lus10025709 [exp]	16.5	0.8145
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Lus10024371 [exp]	16.6	0.8582

Compare expression of checked genes

Lus10025717 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.