Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38070 671 / 0 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035943 [exp] 1724 / 0 AT4G38070 680 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G415800 [exp] 731 / 0 AT4G38070 587 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G131500 [exp] 697 / 0 AT4G38070 580 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G076400 [exp] 91 / 6e-22 AT4G38070 82 / 6e-20 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025718 pacid=23177652 polypeptide=Lus10025718 locus=Lus10025718.g ID=Lus10025718.BGIv1.0 annot-version=v1.0 ATGGAGAGAATCTGTGAAGAATTGGATGAAGCTAAAGCAGAAATTGACAAGCTGAGAGGAGATCTGAAGTGCAAATCACAGTCGTTCCACAATCTGAAAA CATCTCATAATGAGCAACTCCTCCAACTCCAGGAGGCACAATCAAAAATCGAATTGCAAGCCCAAGAAATCAATGTAAAGCAGGAGGAAACTGAGGAGGC AAGGAATGAACTAGAAAAGATTCAACGCAAGTTGAATGAAAAGGAGTCTGTTAACAGAGGACTGAGCTCAGTGAATGATAAACTCAGAGTTGATAATGAT GACAAGTTTCTTAAATGGGAAGAAGAGAAGAGGGAGTTGATGCTATCTCTGGACGAGGCAAATGAGAAGAACACGGATCAACATCAAAAGATAAATGCAC TAATGGCTGAGATTGGAAGTCTTAAGGGGCTTCTTTCAGCTTCTGAGAAGAAGCGTTTACAAGTTGAGAAACAAGCGAAAGAAGCTAAAGCACAACGGGA TAGGGATGATGTGGTAATGACATTGGAGGAAGAGAAGATGAAGGTTGAAGATAAACTAAAGTGGAAAGTTGAGCAGTTTAAGCATCTGGAAGAAGCACAT GAAAAGCTCCGATGTGAGTTCAAAGAAAGGAAAAAGGAGTGGCAGCTTGACAAGTCTACGTTAGTTGATGAGATTTGTAAACTGCAGTCAAGTTTAGATT CTCAGACCAGAATCTCAGAAGATCTCCAGAACCAGTTAAGGATATGTAACCATGCGCTTGCAAATGAAGAGAGCCGGAGGAAGCAGCTGGATGTCGAGGT TTCTGAATTCAGAACACGTTTTGAGAATGTGTATACCGACTACCAGGATGCAAAGTCACAATTGGAATGCTTGACGACAAAGAGGGACAAGGAGATTGCT GATCTAAGACATTCCTTGGTTACAAAGGAGACGCATTGGAAAGAGATTGAATATGAGTCCAGAAAACTTGACCAAGATAATCGAGAACTCATGGAATCCC TTAAAGAACTTCGGGAAGCTCAGATTCATCAATCCGGAAACGGATCTTCTCTAGTTAAACTTAAAAACAAGCTCAGAAGTGTGGAGCAGATACATCGCGA CTGTGCTGCAAATCTTAGAGCTAAAGAAGCTGAATGGAGTTCTGAGGTAGAGAAGCTAACTGCACAAGTTGCCGGTTACCATTCTGCCTTGGATCGTAGT GAAACTGTTGCAAGAAAGCTTGAGCTCGAATTGGAAAATTGTCAATCAGCTCTAATGCAGTTGAAAGTGCAGAAGGAAGAGGTTTCCATAGAATTATTGG TGTTGAAATCAGGAGTAAGTGAGGCTCAATCAAACATAGAAAAGGCTGAAGCTGATGAGGTGATTATCAATGGCAGAACAAGAGCTGTTGAAGTTTCTTG CTTGGTCAAACAGCTGGAGATGAAAGATACTGCCTTGACAAAAGCACAGACCGATGTTGAAGAGGAACGTAGGAAGGTTGCATCTCTATCAAAGAGACTT AAGACAGTGGAACTTATTGAAGAGCAAATGCTTGTAATGGAGAAAGAGGTGGCTCGGTCGAAGGAGATGCTGGAGGAATCATCCAGATGTCATTTCCAAT TTAAGGAGCAAGCTTTGCTGACAGAAAATGATCTGAGGCTGAAAATTAAAGCTGCCTGCGATGACTTGGACTTGGTAAATTCAGAATTGGCCGAGGAGCG TGAGAAGGTAGTTTCATTGTCAAGGAGGGCTGAGGCCGTAGATGGTGTAGAAGAGAAGCTGATATACGTGAAGAAAGAGCTGGAGAGGCATAAGCAGATG CTTGAAGAATCATACAATCATCAGAATCAACAGGAAGAGAAAGCCTTACAAACTGAGAAAGAGTTGCAGGAGATGATAAGACAACTGTCGAGTGCATTGG ATGAAACCAGTATTGAATTGGCAGAAGAGCGTGGGAATGCAGCATCTCTCTCCGAGAGGTTCAAGTCCATCACTGATGGTGAAGAGCCGAAACTAGCGGT GTTGCAGAAAGAAATTCAGAGACAAAAGGAAATGATTGAGGAATCATTCAGATTGCAGCAGCATCATCAGCAAAAGGAAAATGGATTAAAGCAGGAACTT AAAGAAGCTCGTGACGGCTTAGATAGTTTGAGCTCCGAACTAGCTGTCAAAATGTGCGATGGGAATGCAGTTGAATTTGAATTGTGGATATGGAAGTCTA TTGCTCAACGTCTAAACGACGATCTCGAAGAGCATCAAGCACTGAGGAAAGATTTAGAAGCTTCACTTCTTTCACAAGTTGATGTTACAGAAACAATTAA GGAGAAATGTGCGCTTATTCATAAAATAGCGATTGTAAATAACAGAACAGACAAGGTCCTGGAGGATGTTGAGGAAGAAACATTGAGAAGAGAACTGGAA GGTGTGGTGTTCACACATATGATGGCAGAAAGAAGATATAACGATGAGAAGGAGCATCTCTTACAGATATTGGAAGGTAAAGAGAAAAGAATAAATGACC TTTTGCAGCTGGTAAGGAGTTCAGAACAAAACTTTGATCTTTCAATAATGTCTGTTTCATCAGAGATTAATCTGCTGCACGACAAGGCATGCGAGAAGAT AGCTGCTGGGGAGATTCTAGCACAGTTGGAAGTAGAAGAGAAGATGCTGATGATTGGAGAGCTTGAAGATGACATCTCTTCTCTGCAGAGTAAGTTGACA ACTTCAGAAGCATCGGTCCAGGAGCTGAAGAGTGAGAAGCGAGGTTTGACTGAAGATGTGATGAAGCTGACGGCTGAAAGAGAAAACTTGGTTAGTTATA TTGTGGGAGTTGGTAACAGAATTAGTGAGTTCTCGGCGGTGGACATGCAGCTGATGCAAGTACTGGACAACATTGTTCAATCTGCTGAAGCAAAAGGAGA TGATCTGAAAGAGAACAACGAAGCTCATCCTAGGAAGCGATTCGGAGTTGCTGCTGGGGAAGAGAGATCACCATTCAAGGAGCTTATTAACAACTAG
AA sequence Show only first row Show all	>Lus10025718 pacid=23177652 polypeptide=Lus10025718 locus=Lus10025718.g ID=Lus10025718.BGIv1.0 annot-version=v1.0 MERICEELDEAKAEIDKLRGDLKCKSQSFHNLKTSHNEQLLQLQEAQSKIELQAQEINVKQEETEEARNELEKIQRKLNEKESVNRGLSSVNDKLRVDND DKFLKWEEEKRELMLSLDEANEKNTDQHQKINALMAEIGSLKGLLSASEKKRLQVEKQAKEAKAQRDRDDVVMTLEEEKMKVEDKLKWKVEQFKHLEEAH EKLRCEFKERKKEWQLDKSTLVDEICKLQSSLDSQTRISEDLQNQLRICNHALANEESRRKQLDVEVSEFRTRFENVYTDYQDAKSQLECLTTKRDKEIA DLRHSLVTKETHWKEIEYESRKLDQDNRELMESLKELREAQIHQSGNGSSLVKLKNKLRSVEQIHRDCAANLRAKEAEWSSEVEKLTAQVAGYHSALDRS ETVARKLELELENCQSALMQLKVQKEEVSIELLVLKSGVSEAQSNIEKAEADEVIINGRTRAVEVSCLVKQLEMKDTALTKAQTDVEEERRKVASLSKRL KTVELIEEQMLVMEKEVARSKEMLEESSRCHFQFKEQALLTENDLRLKIKAACDDLDLVNSELAEEREKVVSLSRRAEAVDGVEEKLIYVKKELERHKQM LEESYNHQNQQEEKALQTEKELQEMIRQLSSALDETSIELAEERGNAASLSERFKSITDGEEPKLAVLQKEIQRQKEMIEESFRLQQHHQQKENGLKQEL KEARDGLDSLSSELAVKMCDGNAVEFELWIWKSIAQRLNDDLEEHQALRKDLEASLLSQVDVTETIKEKCALIHKIAIVNNRTDKVLEDVEEETLRRELE GVVFTHMMAERRYNDEKEHLLQILEGKEKRINDLLQLVRSSEQNFDLSIMSVSSEINLLHDKACEKIAAGEILAQLEVEEKMLMIGELEDDISSLQSKLT TSEASVQELKSEKRGLTEDVMKLTAERENLVSYIVGVGNRISEFSAVDMQLMQVLDNIVQSAEAKGDDLKENNEAHPRKRFGVAAGEERSPFKELINN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Lus10025718 [exp]	0	1
AT1G72250			Di-glucose binding protein wit...		Lus10013714 [exp]	3.7	0.9655
AT2G36200			P-loop containing nucleoside t...		Lus10014216 [exp]	4.5	0.9642
AT3G27330			zinc finger (C3HC4-type RING f...		Lus10022324 [exp]	4.5	0.9601
AT5G66230			Chalcone-flavanone isomerase f...		Lus10025961 [exp]	4.9	0.9630
AT4G33400			Vacuolar import/degradation, V...		Lus10021729 [exp]	6.0	0.9608
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Lus10018715 [exp]	6.5	0.9599
AT1G49870			unknown protein		Lus10002116 [exp]	10.6	0.9550
AT2G07170			ARM repeat superfamily protein...		Lus10008545 [exp]	11.5	0.9483
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Lus10040248 [exp]	12.0	0.9479
					Lus10037590 [exp]	12.1	0.9595

Compare expression of checked genes

Lus10025718 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.