Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22540 257 / 8e-88 MADS AGL22, SVP SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) AT4G24540 201 / 1e-65 MADS AGL24 AGAMOUS-like 24 (.1) AT3G57230 121 / 3e-34 MADS AGL16 AGAMOUS-like 16 (.1.2) AT4G37940 118 / 4e-33 MADS AGL21 AGAMOUS-like 21 (.1) AT2G14210 114 / 2e-31 MADS AGL44, ANR1 ARABIDOPSIS NITRATE REGULATED 1, AGAMOUS-like 44 (.1) AT3G58780 110 / 4e-30 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G22630 110 / 5e-30 MADS AGL17 AGAMOUS-like 17 (.1) AT5G51870 109 / 6e-30 MADS AGL71 AGAMOUS-like 71 (.1.2.3) AT3G30260 110 / 8e-30 MADS AGL79 AGAMOUS-like 79 (.1) AT3G57390 110 / 1e-29 MADS AGL18 AGAMOUS-like 18 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035942 [exp] 304 / 1e-104 AT2G22540 307 / 1e-104 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Lus10007100 [exp] 117 / 9e-33 AT3G57230 226 / 4e-75 AGAMOUS-like 16 (.1.2) Lus10006715 [exp] 117 / 2e-32 AT4G22950 223 / 1e-73 AGAMOUS-like 19 (.1) Lus10014143 [exp] 114 / 3e-31 AT4G22950 212 / 6e-69 AGAMOUS-like 19 (.1) Lus10005325 [exp] 114 / 4e-31 AT5G13790 249 / 7e-83 AGAMOUS-like 15 (.1) Lus10039580 [exp] 112 / 2e-30 AT5G13790 246 / 2e-81 AGAMOUS-like 15 (.1) Lus10020477 [exp] 108 / 3e-30 AT4G37940 195 / 4e-64 AGAMOUS-like 21 (.1) Lus10017871 [exp] 103 / 3e-28 AT1G69120 264 / 2e-90 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10005302 [exp] 106 / 4e-28 AT4G09960 330 / 2e-115 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G010800 [exp] 260 / 3e-89 AT2G22540 329 / 3e-115 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.002G105600 [exp] 224 / 5e-75 AT2G22540 288 / 3e-99 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.005G155300 [exp] 213 / 2e-70 AT2G22540 234 / 8e-78 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.007G115200 [exp] 193 / 1e-62 AT2G22540 189 / 3e-60 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.007G115100 [exp] 192 / 5e-62 AT2G22540 186 / 1e-58 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.017G044200 [exp] 187 / 2e-60 AT2G22540 206 / 9e-67 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.017G044500 [exp] 186 / 1e-59 AT2G22540 201 / 4e-65 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.007G115000 [exp] 185 / 3e-59 AT2G22540 181 / 9e-57 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.009G079000 [exp] 125 / 4e-36 AT4G37940 293 / 3e-101 AGAMOUS-like 21 (.1) Potri.005G150501 [exp] 124 / 4e-35 AT3G57230 322 / 8e-112 AGAMOUS-like 16 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01486 [flax] [poplar] K-box K-box region PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10025719 pacid=23177519 polypeptide=Lus10025719 locus=Lus10025719.g ID=Lus10025719.BGIv1.0 annot-version=v1.0 ATGGCTCGGGAGAAGATACAGATAAAGAAGATAGACAATGCGACGGCGAGGCAGGTGACGTTCTCAAAGAGGAGGAGAGGCCTCTTCAAGAAAGCCGAGG AGCTTTCTGTTCTCTGCGATGCTGACGTGGCTCTCATCATCTTCTCCTCCACCGGCAAGCTCTTTGAGTTCTCCAGCTCCAGCATGAAAGAAATACTGGA GAGACATAATCTGCACTCCAAGAATCTTGAGAAGCTGGAACAGCCATCACTGGAGTTGCAGCTGGTAGAGAACAGTAACTTCACAAGGTTGAGTAAGGAA GTTGCCGAGAAAACCCGTCAACTCAGGCAAATGAGGGGAGAAGAACTGCAGGGTCTAAGCATTGAAGAACTCCAACAGCTGGAGAAGTCACTTGAAAGTG GGTTGAACCGCGTCATCCAAAAGAAGAGTGATAAAATCACCACCGAGATCACACACCTTCAAACTAAGGGAATGCAATTGATGCAAGAAAATCAGCGCCT AAGAGATCAAGTTGCCGTATTCTGGATAATGCACAGATTTAAGGGGGTTCGATGA
AA sequence Show only first row Show all	>Lus10025719 pacid=23177519 polypeptide=Lus10025719 locus=Lus10025719.g ID=Lus10025719.BGIv1.0 annot-version=v1.0 MAREKIQIKKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFSSSSMKEILERHNLHSKNLEKLEQPSLELQLVENSNFTRLSKE VAEKTRQLRQMRGEELQGLSIEELQQLEKSLESGLNRVIQKKSDKITTEITHLQTKGMQLMQENQRLRDQVAVFWIMHRFKGVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Lus10025719 [exp]	0	1
AT3G14130			Aldolase-type TIM barrel famil...		Lus10013173 [exp]	2.4	0.8779
AT1G69630			F-box/RNI-like superfamily pro...		Lus10032432 [exp]	3.3	0.8394
AT5G05670			signal recognition particle bi...		Lus10013031 [exp]	3.5	0.8775
AT3G13000			Protein of unknown function, D...		Lus10033328 [exp]	4.2	0.8509
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Lus10035942 [exp]	4.6	0.8726
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023908 [exp]	5.9	0.8613
AT2G46910			Plastid-lipid associated prote...		Lus10010277 [exp]	7.9	0.8508
AT4G15950		RDM2, NRPE4, NR...	RNA-DIRECTED DNA METHYLATION 2...		Lus10038766 [exp]	8.2	0.8681
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10005340 [exp]	8.9	0.8461
AT3G02250			O-fucosyltransferase family pr...		Lus10036833 [exp]	10.5	0.8412

Compare expression of checked genes

Lus10025719 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.