Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035750 [exp] 87 / 4e-21 AT1G51640 177 / 4e-51 exocyst subunit exo70 family protein G2 (.1) Lus10010044 [exp] 63 / 3e-12 ND / Lus10015336 [exp] 55 / 5e-10 ND / Lus10022417 [exp] 52 / 1e-08 AT3G49210 68 / 1e-13 O-acyltransferase (WSD1-like) family protein (.1) Lus10027531 [exp] 49 / 4e-07 AT4G02210 56 / 2e-08 unknown protein Lus10028156 [exp] 46 / 5e-06 AT3G60240 1275 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) Lus10014255 [exp] 43 / 3e-05 AT4G35890 91 / 5e-20 winged-helix DNA-binding transcription factor family protein (.1) Lus10029477 [exp] 41 / 4e-05 ND / Lus10021381 [exp] 39 / 0.0005 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025720 pacid=23177455 polypeptide=Lus10025720 locus=Lus10025720.g ID=Lus10025720.BGIv1.0 annot-version=v1.0 ATGTCAAGAGAGGATGATGATGTTCATTCCATTTCCAGTTTCGAAAGTGGTGGCGTTGGAGGCTCAAAAGCTAAACAAGATGATGAAGGGAGTTCTAATC CAAGTATGTGCAATCAGTCCCATCACAACTCTTGTCTAAGACACACACGGAAATACGAAAGGAAGATTGCTCGGTTACATGGCCAACTGTTCTACTCTTC CATCGATCGGAAAATGTTCTTTCGTGGATGGTCCCGTCGTCCCGGCCCCTTGAGGGAAGTGGATATTGAGGGGGATGCGGAAGAAGCAGTGGCGGACATT CGGGAGAGGCGTGTTAGGTTGGCGGCTGGAGGGTCAATTGTCAGCGAGATTTATCGTCTTCTCTCAGCCCTTCTTGGGGTCCGGTTGCAGGCTGTTCATA GGTCAGGTAACAGAGCCGCTCATTCTGTGGCACGCGAGGCTCTTAAATATCGTCCGAGAGTGTTGTCGGTAGTCCTCACTCTTTGGGTTGATTGTAGTTG A
AA sequence Show only first row Show all	>Lus10025720 pacid=23177455 polypeptide=Lus10025720 locus=Lus10025720.g ID=Lus10025720.BGIv1.0 annot-version=v1.0 MSREDDDVHSISSFESGGVGGSKAKQDDEGSSNPSMCNQSHHNSCLRHTRKYERKIARLHGQLFYSSIDRKMFFRGWSRRPGPLREVDIEGDAEEAVADI RERRVRLAAGGSIVSEIYRLLSALLGVRLQAVHRSGNRAAHSVAREALKYRPRVLSVVLTLWVDCS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10025720 [exp]	0	1
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Lus10020104 [exp]	15.9	0.8264
AT1G22800			S-adenosyl-L-methionine-depend...		Lus10018987 [exp]	23.4	0.8463
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10030738 [exp]	38.7	0.8318
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10017601 [exp]	43.8	0.8313
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10003808 [exp]	44.0	0.8306
AT1G13770		RUS3	ROOT UV-B SENSITIVE 3, Protein...		Lus10037076 [exp]	47.7	0.8228
AT3G49725			GTP-binding protein, HflX (.1)		Lus10018403 [exp]	49.4	0.8283
					Lus10037345 [exp]	49.5	0.7653
AT2G39970		PXN, PMP38, APE...	peroxisomal NAD carrier, perox...		Lus10009886 [exp]	60.9	0.8085
AT2G38900			Serine protease inhibitor, pot...		Lus10035626 [exp]	73.3	0.8143

Compare expression of checked genes

Lus10025720 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.