Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22530 917 / 0 Alkaline-phosphatase-like family protein (.1) AT5G17250 171 / 1e-43 Alkaline-phosphatase-like family protein (.1) AT3G01380 55 / 4e-07 transferases;sulfuric ester hydrolases;catalytics;transferases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035939 [exp] 874 / 0 AT2G22530 410 / 1e-129 Alkaline-phosphatase-like family protein (.1) Lus10005793 [exp] 182 / 9e-47 AT5G17250 1088 / 0.0 Alkaline-phosphatase-like family protein (.1) Lus10006806 [exp] 172 / 1e-43 AT5G17250 1085 / 0.0 Alkaline-phosphatase-like family protein (.1) Lus10039473 [exp] 56 / 2e-07 AT3G01380 1466 / 0.0 transferases;sulfuric ester hydrolases;catalytics;transferases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G010600 [exp] 1012 / 0 AT2G22530 941 / 0.0 Alkaline-phosphatase-like family protein (.1) Potri.003G059300 [exp] 168 / 2e-42 AT5G17250 1095 / 0.0 Alkaline-phosphatase-like family protein (.1) Potri.001G350700 [exp] 59 / 1e-08 AT3G01380 1392 / 0.0 transferases;sulfuric ester hydrolases;catalytics;transferases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0088 [flax] [poplar] Alk_phosphatase PF01663 [flax] [poplar] Phosphodiest Type I phosphodiesterase / nucleotide pyrophosphatase
Representative CDS sequence Show only first row Show all	>Lus10025722 pacid=23177486 polypeptide=Lus10025722 locus=Lus10025722.g ID=Lus10025722.BGIv1.0 annot-version=v1.0 ATGCCTCAGCTAACGTGCACTAAACTGACCGTCTTCACGCTAGCTGCGGTCTTCATCCAAATCATAGGTCTCTCCATTTTCGTCTACGGTTTCTTCCCCG TCAAACCCACCCTCTCCGGCGTCAGTGGCCTTGAGAGCTTCTATCCTCCGGGGCATTCTGTTGAGAATGGCAGCGAGATACACGCTGATTTGCCTCCTCA TCAGCTGAAATCTTTATATCAGGAGCTCTCTGGGGTGTCTCCTATGTTTGATCGACTGATTCTCATGGTTATTGATGGTCTTCCAGCAGAATTTGTGCTT GGCAAGGGCGGAAAGCCTCCCCGGAGAGATCTGGTGGAAGCTATGCCATATATCCATTCATTGTTATCTACCCGAAGGGCATTTGGGTACCATGCAAAGG CTGCACCTCCAACTGTTACAATGCCTCGATTGAAGGCTATGGTTTCCGGAGCAATAGGTGGATTCTTGGACGTGGCTTTCAATTTTAACACCCAGGCTCT GTTAGATGACAATCTTCTTGGTCAGTTTTTCAAAATTGGCTGGAAAATGGTCATGATGGGGGATGACACATGGCTTAGGCTATTTCCGGGGTTATTTGCG AGACATGATGGAGTTCACAGTTTCTATGTTAAAGATACTGTACAAGTGGATTTCAATGTTTCTAGGCATCTGGGAAAGGAGCTTATTACTGATGATTGGA ATCTTCTGGTACTTCATTATCTTGGCCTGGATCATGTTGGACATATTGGAGGGCGCAGCAGTCCCCTGATGGGCCCAAAACTTACAGAGATGGATGAAGT GGTTAAAAGCATTCATTTACATGCCATACAAACTCAAGCGCATGATCATGAACGGACACTTTTGTTGGTGGTGAGTGATCATGGTATGACAGAAAGTGGG AATCATGGAGGTTCTTCATATGAAGAAACTGACTCCCTAGCTCTTTTCATTGGTTTTGAAAATGAAATAACGGATCAGGCATCAGTCACTTCTATTCATC AGGTTGATATCACCCCAACACTGGCTCTTCTTTTTAATCTCCCGATACCCAAAAACAATGTTGGAATCCTGATATCTGAAACCTTTGATTCTCGTCCAGA AGACCAAAGGCTGAGAGCTCTGGAGTTGAATTCATGGCAGTTACTGAGATTAGTTCAGGCAGAGTTACCAGCATTCTCATGTGGAGATTCAGAAGTCCTT GACTTGTCTGATCATGTTGGGTCTAGAAGTGGAGAATGCGGTGGAAGCATAGAGAGGAACCTTTGTTGCTTGTACACAAAAGCTAGAAGTATTAGTAGTT TTTGGGAATCTACGAGGACTTCCAGGCTCGACAGCGAGAATGGATACAGGGTTGCTGCTGCTGCATATTATGATTTCTTGAATACTGCCAGTGAGTGGTT GTCTCGCAGAGTAACAGATAAGCCTGTCAGCCTGTTAGCTTGTGGGGTCGTGGCGATGGCTTTGTCCTGTATAATCTTGTTAGCCATCCTAATTTGGATG AAAAGAAAAGTCTGCACCAGGAGTCACCCTTGCACACGATATATACCCGAGTTTTGTTTGCCTAATGTCTTTGTCCCAAGTGTTATGCTCATCCTTATAC TCAGCATGGGTTCAAGTTCCATGGTAGAGGAAGAACAATATATTTGGCATTTTGTGACAGTGACATCATCCCTGTTACTACTCCGAAAAGCATTGGGATC GCTTCATGTTGGAAGTGAACGAGGTTCGCTTACATTGAAGCAACAGAATCAAATACATAGTACTGAATTTTGCTCTATATTTTTGCTTCTTATTTCTGGG AGAGTATTGAGAGGCTGGCATCAAGGTGGTGTGAATTGGACTCATCTTTCAGACATCTCTAAGTGGCTTGAAAAGTTTGGGAGTGGTAGTATATGGTGGA TTCAGCTAGTCTCAGGACTCCTCATAATCAGTTTGGGCTTATTTGCTTTACGTTCTTGCTGGTCTATAGGGAAAGCAAATCATCTTGTTGCATTATGTTT CTCAGTATCTGGACTGTTTGTTCTATGGAATATCATGAAACATCAAGGCAATGCTATTGCATCTTCCAGCAGTTATAGTGCTACTACATCAATCCAGATA ACCTTTGCAACATTGGGTTTCTCTGCATTGAGCAGCCTATTGGCCATACCATGGCTGATGCCCACTGGTATTTCTTACAAGTGCTCAACATCTTTTTTAA ACTTGCAGCAATCATTTCCTGTTGCCCTTAAACAGAAGGCTCTACTGTTGGAATTTAGAGATGCTACACATATGATTGGCTTAGCATACATATTATTTTG GTGTCTCCTTCAAGTGGTGCTTCAACAGCCAATCAATGCAATGCCCGTCTTTTTGCTTATGTTGCAAGTGTTCGCTTGCATGTTTTGTAATTCTCAAGGT GAACGAGACCAGATGGAACTAGTTGAGGTTGCGTCGTTGTACTACATGGGTATGGCTGGACATTTTGCTCTAGGGAACAGCAATACTTTAGCCACTATTG ATGTTGCTGGAGCGTTCATCGGCCTCTCAAGTCACTCCATGTTCGTTTCTGGAATTTTGATGTTCATGATCACCTATGCATCTCCCCTGTTATTTATTTT GAGTTTGGTAATGTACAAGTCTGTGAAAACCACAAACTATCTTGCCACTGTACAAATGGATGACTCGGGCGAGATTCTCAAACTCATGCTTGGGTTCCCC TGCCTAGTTCCACTGATCATAAACTCAATTCTCTTGACATCGTACACAGTTGTATTGCTCTTGATGAGGAACCATCTGTTTGTGTGGAGCGTCTTCTCCC CCAAATACTTGTACATCTGCGCAACGTCTGTTTGTGTTTATACGGCGGTGCTTGTGGTGGCTGTGACGGAGACCTACACATTGCTGGTACTAACCTTGAG GAGAAAGCCGGGTTCGCTACATCATGGAGATGAATAG
AA sequence Show only first row Show all	>Lus10025722 pacid=23177486 polypeptide=Lus10025722 locus=Lus10025722.g ID=Lus10025722.BGIv1.0 annot-version=v1.0 MPQLTCTKLTVFTLAAVFIQIIGLSIFVYGFFPVKPTLSGVSGLESFYPPGHSVENGSEIHADLPPHQLKSLYQELSGVSPMFDRLILMVIDGLPAEFVL GKGGKPPRRDLVEAMPYIHSLLSTRRAFGYHAKAAPPTVTMPRLKAMVSGAIGGFLDVAFNFNTQALLDDNLLGQFFKIGWKMVMMGDDTWLRLFPGLFA RHDGVHSFYVKDTVQVDFNVSRHLGKELITDDWNLLVLHYLGLDHVGHIGGRSSPLMGPKLTEMDEVVKSIHLHAIQTQAHDHERTLLLVVSDHGMTESG NHGGSSYEETDSLALFIGFENEITDQASVTSIHQVDITPTLALLFNLPIPKNNVGILISETFDSRPEDQRLRALELNSWQLLRLVQAELPAFSCGDSEVL DLSDHVGSRSGECGGSIERNLCCLYTKARSISSFWESTRTSRLDSENGYRVAAAAYYDFLNTASEWLSRRVTDKPVSLLACGVVAMALSCIILLAILIWM KRKVCTRSHPCTRYIPEFCLPNVFVPSVMLILILSMGSSSMVEEEQYIWHFVTVTSSLLLLRKALGSLHVGSERGSLTLKQQNQIHSTEFCSIFLLLISG RVLRGWHQGGVNWTHLSDISKWLEKFGSGSIWWIQLVSGLLIISLGLFALRSCWSIGKANHLVALCFSVSGLFVLWNIMKHQGNAIASSSSYSATTSIQI TFATLGFSALSSLLAIPWLMPTGISYKCSTSFLNLQQSFPVALKQKALLLEFRDATHMIGLAYILFWCLLQVVLQQPINAMPVFLLMLQVFACMFCNSQG ERDQMELVEVASLYYMGMAGHFALGNSNTLATIDVAGAFIGLSSHSMFVSGILMFMITYASPLLFILSLVMYKSVKTTNYLATVQMDDSGEILKLMLGFP CLVPLIINSILLTSYTVVLLLMRNHLFVWSVFSPKYLYICATSVCVYTAVLVVAVTETYTLLVLTLRRKPGSLHHGDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22530			Alkaline-phosphatase-like fami...		Lus10025722 [exp]	0	1
AT3G58160		XI-16, MYA3, AT...	MYOSIN XI-16, MYOSIN A3, MYOSI...		Lus10033865 [exp]	1.0	0.8927
AT3G49000			RNA polymerase III subunit RPC...		Lus10033989 [exp]	4.4	0.7954
AT5G24710			Transducin/WD40 repeat-like su...		Lus10028093 [exp]	10.3	0.8357
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10019401 [exp]	28.2	0.8233
AT1G16780		AtVHP2;2, AVPL1	Inorganic H pyrophosphatase fa...		Lus10034800 [exp]	31.0	0.8214
AT1G20670			DNA-binding bromodomain-contai...		Lus10030739 [exp]	38.3	0.7492
AT5G19150			pfkB-like carbohydrate kinase ...		Lus10021933 [exp]	65.1	0.7985
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10041425 [exp]	66.0	0.7883
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10006304 [exp]	79.7	0.7913
AT5G58700		ATPLC4	phosphatidylinositol-speciwc p...		Lus10018240 [exp]	80.4	0.7728

Compare expression of checked genes

Lus10025722 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.