Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52050 301 / 5e-102 5'-3' exonuclease family protein (.1.2.3.4.5) AT1G34380 66 / 1e-12 5'-3' exonuclease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035938 [exp] 169 / 2e-54 AT3G52050 120 / 4e-34 5'-3' exonuclease family protein (.1.2.3.4.5) Lus10006622 [exp] 77 / 2e-16 AT1G34380 409 / 2e-142 5'-3' exonuclease family protein (.1.2) Lus10039380 [exp] 75 / 1e-15 AT1G34380 402 / 1e-139 5'-3' exonuclease family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G125700 [exp] 311 / 1e-105 AT3G52050 510 / 1e-180 5'-3' exonuclease family protein (.1.2.3.4.5) Potri.013G114400 [exp] 72 / 7e-15 AT1G34380 423 / 2e-148 5'-3' exonuclease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [flax] [poplar] PIN PF02739 [flax] [poplar] 5_3_exonuc_N 5'-3' exonuclease, N-terminal resolvase-like domain CL0464 [flax] [poplar] 5_3_exonuc_C PF01367 [flax] [poplar] 5_3_exonuc 5'-3' exonuclease, C-terminal SAM fold
Representative CDS sequence Show only first row Show all	>Lus10025723 pacid=23177515 polypeptide=Lus10025723 locus=Lus10025723.g ID=Lus10025723.BGIv1.0 annot-version=v1.0 ATGGACATTAAGGTCATCGAGGCACCAGGAGTAGAAGCAGATGATGTGATAGGAACATTAGCTACAAAAAGTGTCGAAGAAGGGTTCAAGGTGCGGGTGG TTTCTCCAGATAAAGACTTCTTCCAAATTCTATCACCTTCATTGCGTCTTCTACGCCTTGTACCACGTGGTTCTGAAATGGTTTCTTTCGGGATGGAGGA TTTTGCTGAACGATATGGATCCCTGAAACCTTCTCAATTTGTTGATGTAATCTCTCTTGTGGGTGACAAAGCAGATAATATTCCAGGAGTTGGAGGGATT GGTGATGTTCATGCTTTGCAACTAATAACTAGATTTGGCACACTGGAAAACTTGTTGCAATGTGTTGATCAGGTTGCGGAGGAACGGATAAAACAGGCCC TGATAACGCATGCTGATCAGGCTGTATTAAGCAAGGAACTGGCGATGCTACGTTGTGATCTCCCATATTACATGGTTCCATTCAACACTGAAGATCTAGA GTTTAGGAGACCAGAGGACAATGGTGAGAAGTTTACGAGTTTACTGAATGCTATCAGTGCATATGCGGAAGGATTTTCAGCCGATCCAATCATAAGACGA GCTTCGTATTTGTGGAAGAAGCTTGATTCTTCTTCTTAA
AA sequence Show only first row Show all	>Lus10025723 pacid=23177515 polypeptide=Lus10025723 locus=Lus10025723.g ID=Lus10025723.BGIv1.0 annot-version=v1.0 MDIKVIEAPGVEADDVIGTLATKSVEEGFKVRVVSPDKDFFQILSPSLRLLRLVPRGSEMVSFGMEDFAERYGSLKPSQFVDVISLVGDKADNIPGVGGI GDVHALQLITRFGTLENLLQCVDQVAEERIKQALITHADQAVLSKELAMLRCDLPYYMVPFNTEDLEFRRPEDNGEKFTSLLNAISAYAEGFSADPIIRR ASYLWKKLDSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52050			5'-3' exonuclease family prote...		Lus10025723 [exp]	0	1
AT3G54360			zinc ion binding (.1)		Lus10024116 [exp]	3.5	0.7803
AT3G25690		AtCHUP1, CHUP1	Arabidopsis thaliana CHLOROPLA...		Lus10034264 [exp]	15.2	0.7925
AT1G34570			Essential protein Yae1, N-term...		Lus10019775 [exp]	16.7	0.6737
AT5G13410			FKBP-like peptidyl-prolyl cis-...		Lus10040937 [exp]	17.0	0.8240
AT1G68010		ATHPR1, HPR	hydroxypyruvate reductase (.1....		Lus10014115 [exp]	26.6	0.8040
AT3G29185			Domain of unknown function (DU...		Lus10032999 [exp]	32.2	0.7949
AT5G48330		RUG2	RCC1/UVR8/GEF-like 2, Regulato...		Lus10016075 [exp]	39.8	0.7748
AT1G72740	MYB		Homeodomain-like/winged-helix ...		Lus10027621 [exp]	41.4	0.7298
AT2G46910			Plastid-lipid associated prote...		Lus10036340 [exp]	48.5	0.7638
AT2G04842		EMB2761	EMBRYO DEFECTIVE 2761, threony...		Lus10006406 [exp]	53.8	0.7707

Compare expression of checked genes

Lus10025723 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.