Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38090 309 / 2e-107 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035937 [exp] 409 / 2e-147 AT4G38090 313 / 2e-109 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G010400 [exp] 333 / 1e-116 AT4G38090 316 / 8e-110 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF01205 [flax] [poplar] UPF0029 Uncharacterized protein family UPF0029
Representative CDS sequence Show only first row Show all	>Lus10025724 pacid=23177448 polypeptide=Lus10025724 locus=Lus10025724.g ID=Lus10025724.BGIv1.0 annot-version=v1.0 ATGGCAACCACCAGCAGCAAAAACGCTGGCGCTTTCACGACGCTGAAAGAGAGAGTCACCTCCGAGAAGGAAATCAAAAAGAGCAAATTCATCGCCATTT CTGGGCCCGTCTCCAACGAACAGTCCGCCTTCGCTTTCCTCAATCAGGTCAGAGATCCTCGCGCCACTCACAATTGCTGGGCTTACAAGGTAGGGGATCA ATTCCGGAGCAATGACGACGGCGAACCATCGGGGACAGCTGGGAAGCCAATCCAATCTGCAATTGAATCTTCAGGGATTGATAGAGTAATGGTGGTTGTG ATCAGGCATTTTGGAGGGATTAAGTTGGGGACTGGAGGATTAGTGAGGGCTTACGGGGGAGTGGCGGCTGAATGCTTGAGGAATGCCCCAACGCAGCTTG TGAAGTCCAAGGTTCCACTTGGCATCGAGGTCCCCTTCGAGCTCTTGGGGATTCTAAATCATCAGTTACAATTCTTTCAAGTTACGGACCTCAAACAAGA TTATGAAACCGGTAAAGATGGTATTGCCATGGTTACTTTCAAGGTCGATTTTGACAAGGCGGAGGAATTGGAGGATGCTGTTAAAAGCAATTGCAGCAGG GACCTCTTCTTTTATAGGATGGCTTTAGGGTCAGTCCTATCAGTGTACATGATTCCAGTAAATTGCTGCTCAGGTGCTATTTTGGTAGACATGTATACTT CCTTCCTCCCAATTGGGTCATATTGA
AA sequence Show only first row Show all	>Lus10025724 pacid=23177448 polypeptide=Lus10025724 locus=Lus10025724.g ID=Lus10025724.BGIv1.0 annot-version=v1.0 MATTSSKNAGAFTTLKERVTSEKEIKKSKFIAISGPVSNEQSAFAFLNQVRDPRATHNCWAYKVGDQFRSNDDGEPSGTAGKPIQSAIESSGIDRVMVVV IRHFGGIKLGTGGLVRAYGGVAAECLRNAPTQLVKSKVPLGIEVPFELLGILNHQLQFFQVTDLKQDYETGKDGIAMVTFKVDFDKAEELEDAVKSNCSR DLFFYRMALGSVLSVYMIPVNCCSGAILVDMYTSFLPIGSY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38090			Ribosomal protein S5 domain 2-...		Lus10025724 [exp]	0	1
AT5G17400		ER-ANT1	endoplasmic reticulum-adenine ...		Lus10017874 [exp]	2.8	0.7063
AT3G26115			Pyridoxal-5'-phosphate-depende...		Lus10036952 [exp]	7.9	0.6459
AT1G20920			P-loop containing nucleoside t...		Lus10025525 [exp]	15.9	0.6492
AT4G21720			unknown protein		Lus10017512 [exp]	30.7	0.6307
AT3G51750			unknown protein		Lus10002202 [exp]	37.0	0.5702
AT1G27760		SAT32, ATSAT32	SALT-TOLERANCE 32, interferon-...		Lus10025970 [exp]	43.1	0.6194
					Lus10007413 [exp]	43.7	0.5954
AT3G27950			GDSL-like Lipase/Acylhydrolase...		Lus10008784 [exp]	52.1	0.5793
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10033954 [exp]	54.4	0.5770
AT2G47830			Cation efflux family protein (...		Lus10040922 [exp]	58.0	0.5846

Compare expression of checked genes

Lus10025724 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.