Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22500 176 / 1e-53 UCP5, ATPUMP5, DIC1 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) AT4G24570 173 / 8e-53 DIC2 dicarboxylate carrier 2 (.1) AT5G09470 120 / 3e-32 DIC3 dicarboxylate carrier 3 (.1) AT1G14140 110 / 2e-28 Mitochondrial substrate carrier family protein (.1) AT3G54110 108 / 6e-28 ATUCP1, UCP1, UCP2, UCP, ATPUMP1 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) AT5G58970 99 / 1e-24 ATUCP2 uncoupling protein 2 (.1.2) AT4G03115 85 / 5e-19 Mitochondrial substrate carrier family protein (.1) AT5G19760 68 / 3e-13 Mitochondrial substrate carrier family protein (.1) AT1G79900 53 / 6e-08 ATMBAC2, BAC2 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) AT5G46800 53 / 6e-08 BOU A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035936 [exp] 380 / 7e-135 AT4G24570 209 / 5e-67 dicarboxylate carrier 2 (.1) Lus10009270 [exp] 199 / 3e-65 AT2G22500 204 / 8e-67 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Lus10015897 [exp] 157 / 5e-47 AT4G24570 184 / 2e-56 dicarboxylate carrier 2 (.1) Lus10009271 [exp] 127 / 6e-37 AT4G24570 138 / 7e-41 dicarboxylate carrier 2 (.1) Lus10016445 [exp] 103 / 5e-26 AT5G58970 493 / 1e-177 uncoupling protein 2 (.1.2) Lus10027755 [exp] 102 / 2e-25 AT3G54110 515 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10040709 [exp] 101 / 3e-25 AT5G58970 512 / 0.0 uncoupling protein 2 (.1.2) Lus10035538 [exp] 101 / 3e-25 AT3G54110 512 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10021123 [exp] 99 / 3e-24 AT3G54110 521 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G157300 [exp] 198 / 3e-62 AT2G22500 412 / 2e-145 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.002G104400 [exp] 196 / 1e-61 AT2G22500 427 / 1e-151 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G045200 [exp] 187 / 5e-60 AT2G22500 286 / 3e-98 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G047800 [exp] 189 / 6e-59 AT4G24570 435 / 2e-154 dicarboxylate carrier 2 (.1) Potri.017G045150 [exp] 189 / 1e-58 AT2G22500 457 / 3e-163 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G045100 [exp] 189 / 1e-58 AT2G22500 451 / 6e-161 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.007G113000 [exp] 182 / 4e-56 AT4G24570 404 / 4e-142 dicarboxylate carrier 2 (.1) Potri.017G045332 [exp] 181 / 2e-55 AT2G22500 410 / 1e-144 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G045400 [exp] 166 / 7e-50 AT4G24570 355 / 4e-123 dicarboxylate carrier 2 (.1) Potri.010G165900 [exp] 107 / 1e-27 AT1G14140 447 / 1e-159 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10025725 pacid=23177520 polypeptide=Lus10025725 locus=Lus10025725.g ID=Lus10025725.BGIv1.0 annot-version=v1.0 ATGGGTTTGAAAGGGTTTTTGGAGGGAGGGGTTGCTTCCATCGTCGCTGGATGCTCCACCCACCCGATTGATTTGATCAAAGTCCGTATGCAGCTCCAAG GAGAATCACCCTCTCCATCTCTCCGGCCAGCACTCGCATTTCCCAACCACCACCACTCCATCCACCTCCCTCCCCCACCGCGCGTGGGTCCAATTGCCGT CGCTACCAAAATTTTCCACCAAGAAGGACTCACCGCCCTCTTTTCCGGCGTCTCCGCCACCGTCCTCCGCCAGACCCTCTACTCCACCACCAGGATGGGA ATCTACGACATCCTCAAGCACAAGTGGACCGATCCCTCCACCAAGACCATGCCCCTCCAGAAAAAGATCGGCGCCGGTCTATTCGCCGGCGCGATAGCAC TGGTGACGGCGTCTCAGCTGGCGTCTTACGACGAGTTCAAGGAGATGATTTTGGAGAGAGGGGTGATGGCCGACGGGATGGGGACCCACGTGACGGCGAG TTTCGCGGCCGGGTTGGTGGCGGCGGTGGCGTCTAACCCGGTGGACGTGATAAAGACGAGGGTCATGAATATGAAGGTTGAGCAGGGGAAGGCGGCGCCT TATGCTGGTGCTATGGATTGTGCCATTAAAACGGTGAAAGCGGAGGGTCCGATGGCTCTGTATAAAGGGTTTATCCCCACCATTTCTAGACAGGGTCCTT TCACTGTTGTTCTGTTTGTGACTCTGGAACAGGTTAGGAAGTTGCTCAAGGATTTCTGA
AA sequence Show only first row Show all	>Lus10025725 pacid=23177520 polypeptide=Lus10025725 locus=Lus10025725.g ID=Lus10025725.BGIv1.0 annot-version=v1.0 MGLKGFLEGGVASIVAGCSTHPIDLIKVRMQLQGESPSPSLRPALAFPNHHHSIHLPPPPRVGPIAVATKIFHQEGLTALFSGVSATVLRQTLYSTTRMG IYDILKHKWTDPSTKTMPLQKKIGAGLFAGAIALVTASQLASYDEFKEMILERGVMADGMGTHVTASFAAGLVAAVASNPVDVIKTRVMNMKVEQGKAAP YAGAMDCAIKTVKAEGPMALYKGFIPTISRQGPFTVVLFVTLEQVRKLLKDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22500		UCP5, ATPUMP5, ...	DICARBOXYLATE CARRIER 1, PLANT...		Lus10025725 [exp]	0	1
AT5G45320			unknown protein		Lus10035675 [exp]	4.4	0.7843
AT2G02230		ATPP2-B1	phloem protein 2-B1 (.1)		Lus10029674 [exp]	5.7	0.8095
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Lus10011590 [exp]	5.8	0.8231
AT4G12040		AtSAP7	stress-associated protein 7, A...		Lus10030150 [exp]	7.4	0.7913
AT5G47740			Adenine nucleotide alpha hydro...		Lus10029567 [exp]	11.8	0.7938
AT1G70310		SPDS2	spermidine synthase 2 (.1)		Lus10030629 [exp]	11.9	0.8228
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10025397 [exp]	13.2	0.8056
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10032157 [exp]	17.4	0.8120
AT3G49210			O-acyltransferase (WSD1-like) ...		Lus10017721 [exp]	17.4	0.7432
AT5G24560		ATPP2-B12	phloem protein 2-B12 (.1)		Lus10025666 [exp]	19.3	0.7530

Compare expression of checked genes

Lus10025725 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.