Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48610 749 / 0 NPC6 non-specific phospholipase C6 (.1) AT1G07230 576 / 0 NPC1 non-specific phospholipase C1 (.1) AT2G26870 566 / 0 NPC2 non-specific phospholipase C2 (.1) AT3G03520 539 / 0 NPC3 non-specific phospholipase C3 (.1) AT3G03530 505 / 1e-175 NPC4 non-specific phospholipase C4 (.1) AT3G03540 504 / 3e-175 NPC5 non-specific phospholipase C5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035935 [exp] 938 / 0 AT3G48610 773 / 0.0 non-specific phospholipase C6 (.1) Lus10040678 [exp] 594 / 0 AT1G07230 809 / 0.0 non-specific phospholipase C1 (.1) Lus10005860 [exp] 573 / 0 AT1G07230 810 / 0.0 non-specific phospholipase C1 (.1) Lus10009153 [exp] 538 / 0 AT3G03530 694 / 0.0 non-specific phospholipase C4 (.1) Lus10028492 [exp] 534 / 0 AT3G03530 689 / 0.0 non-specific phospholipase C4 (.1) Lus10036038 [exp] 323 / 8e-108 AT2G26870 423 / 1e-147 non-specific phospholipase C2 (.1) Lus10036039 [exp] 154 / 7e-44 AT2G26870 229 / 4e-73 non-specific phospholipase C2 (.1) Lus10001208 [exp] 145 / 2e-41 AT1G07230 213 / 1e-67 non-specific phospholipase C1 (.1) Lus10001207 [exp] 133 / 3e-37 AT1G07230 146 / 7e-43 non-specific phospholipase C1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G097900 [exp] 786 / 0 AT3G48610 813 / 0.0 non-specific phospholipase C6 (.1) Potri.012G099300 [exp] 785 / 0 AT3G48610 834 / 0.0 non-specific phospholipase C6 (.1) Potri.001G275500 [exp] 579 / 0 AT2G26870 769 / 0.0 non-specific phospholipase C2 (.1) Potri.009G069900 [exp] 574 / 0 AT2G26870 786 / 0.0 non-specific phospholipase C2 (.1) Potri.001G250500 [exp] 569 / 0 AT1G07230 820 / 0.0 non-specific phospholipase C1 (.1) Potri.009G045100 [exp] 566 / 0 AT1G07230 815 / 0.0 non-specific phospholipase C1 (.1) Potri.013G073600 [exp] 545 / 0 AT3G03530 709 / 0.0 non-specific phospholipase C4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0088 [flax] [poplar] Alk_phosphatase PF04185 [flax] [poplar] Phosphoesterase Phosphoesterase family
Representative CDS sequence Show only first row Show all	>Lus10025726 pacid=23177442 polypeptide=Lus10025726 locus=Lus10025726.g ID=Lus10025726.BGIv1.0 annot-version=v1.0 ATGGCGACATTCTCTTGCATCTCACTCTTATTATTTCTGTTACTTTCGACCGACATTTCCTCGGCGGAAAGCCAGAGTCCAATCAAAACCGTAGTGGTTC TGGTGATGGAAAATAGATCGTTAGAAAATATGCTTGGGTGGATGAAAAAGACAATCAACCCATCAATCGACGGCGTCACCGGTTCAGAATGCAACCCTCT GACTACCGCCAACTCCTCAGCTATCTGCTTCACAGACGACGCTGAATTCGTGGATCCGGATCCGGGTCATTCCTTCGAGGAAGTCCTCCAGCAGGTATTC GGGAACAGCTCAATTCCTTCCATGTCTGGATTCGTGGAGCAAGCACTCTCGCTTTCCCCAAATCTATTCAAAACCGTGATGAAAGGTTTCAACCCAGATT CCCTTCCTATCTACTCAACCTTGGTAAAAGAATTCGCGGTATTCGACAGATGGTTCTCTTCAATCCCAGGGCCTACCCAACCAAACCGGTTATTCGTCTA CTCCGCTACTTCCCACGGTTCAACCAGCCACGTAGCAAAGCAATTGGCCCTGGGTTACCCGCAGAGAACAATCTTCGATTCCCTCCACGAACAAGGAAAG AGCTTTGGGGTCTACTTCCAGAGCATACCAACCACTCTCTTTTTCAGGAATTTGAGGAAATTGAAGTATGTTTGGAATTTCCACGAGTTCGAATTAGGGT TCAAGAGGGACGCGAGGGAAGGGAAGCTCCCTAATTTGGCAGTGATAGAGCCGAGGTTCTTTGATGTCCCTGGTTTCTCTGGGAACGACGATCATCCTTC CCACGACGTTGCAGATGGGCAGAAGCTGGTAAAGCAAGTATACGAGAGCTTGAGAAGCAGCCCGCAATGGAACGAAACGTTATTGGTGATTACTTACGAT GAACACGGAGGCTTCTTTGACCATGTTCGGACTCCCTTTGTCGGTGTCCCTAACCCGGATGGGAATACGGGTCCTGCCCCGTTTTTCTTCAACTTTGATC GCCTTGGTGTTCGGGTTCCCACCATCATGGTCTCCCCCTGGATCAACAAAGGCACTGTGATTAGTCGTCCCGGTGGACCTGAAGCAAGTTCGGAATTCGA GCACTCTTCCATTCCAGCAAGCATTAAAAAGCTATTCAATCTATCATCCAATTTTCTGACACACAGGGATGCTTGGGCGGGTACCTTTGAAGGTGTCGTT CAACAATTGACATCTCCAAGAACTGATTGCCCTGAAACTTTGCCGGATGTGACTCCGTTGAGAAAGACAGCAGCAGCTAAGGATGATGATGAAAAAAAGT TGTCTCAATTTCAGAAGGAGCTGGTTCAGCTAGCAGCTGTTTTGAATGGAGATCACTTGTTGAGCGGTTTCCCTAATGAAATGAGCAAGAATATGAATGT TAAGGAAGCTCATGAATACGTTCAAGGAGCAGTAGCAAGGTTCATAAGAGCAAGCAAAGAGGCGATTAAGTTGGGTGCACATGAATCTGCCATTGTTGAT ATGAGGTCCTCCCTCACTACTAGATCATCTTTACGCCCCCCTCCCTAG
AA sequence Show only first row Show all	>Lus10025726 pacid=23177442 polypeptide=Lus10025726 locus=Lus10025726.g ID=Lus10025726.BGIv1.0 annot-version=v1.0 MATFSCISLLLFLLLSTDISSAESQSPIKTVVVLVMENRSLENMLGWMKKTINPSIDGVTGSECNPLTTANSSAICFTDDAEFVDPDPGHSFEEVLQQVF GNSSIPSMSGFVEQALSLSPNLFKTVMKGFNPDSLPIYSTLVKEFAVFDRWFSSIPGPTQPNRLFVYSATSHGSTSHVAKQLALGYPQRTIFDSLHEQGK SFGVYFQSIPTTLFFRNLRKLKYVWNFHEFELGFKRDAREGKLPNLAVIEPRFFDVPGFSGNDDHPSHDVADGQKLVKQVYESLRSSPQWNETLLVITYD EHGGFFDHVRTPFVGVPNPDGNTGPAPFFFNFDRLGVRVPTIMVSPWINKGTVISRPGGPEASSEFEHSSIPASIKKLFNLSSNFLTHRDAWAGTFEGVV QQLTSPRTDCPETLPDVTPLRKTAAAKDDDEKKLSQFQKELVQLAAVLNGDHLLSGFPNEMSKNMNVKEAHEYVQGAVARFIRASKEAIKLGAHESAIVD MRSSLTTRSSLRPPP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48610		NPC6	non-specific phospholipase C6 ...		Lus10025726 [exp]	0	1
AT5G15450		AtCLPB3, APG6, ...	CASEIN LYTIC PROTEINASE B-P, A...		Lus10013191 [exp]	1.4	0.9145
AT4G11350			Protein of unknown function (D...		Lus10036382 [exp]	1.4	0.8978
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10011016 [exp]	3.0	0.8930
AT5G65490			unknown protein		Lus10012731 [exp]	4.5	0.8357
AT4G28570			Long-chain fatty alcohol dehyd...		Lus10024922 [exp]	4.9	0.8593
AT5G12190			RNA-binding (RRM/RBD/RNP motif...		Lus10026814 [exp]	5.8	0.8387
AT4G28570			Long-chain fatty alcohol dehyd...		Lus10022903 [exp]	6.3	0.8703
AT3G25500		AHF1, AFH1, ATF...	ARABIDOPSIS THALIANA FORMIN HO...		Lus10002149 [exp]	7.0	0.8589
AT1G77360			Tetratricopeptide repeat (TPR)...		Lus10017633 [exp]	7.5	0.8549
AT1G15710			prephenate dehydrogenase famil...		Lus10023121 [exp]	7.5	0.8734

Compare expression of checked genes

Lus10025726 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.