Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22475 291 / 9e-98 GEM GL2-EXPRESSION MODULATOR, GRAM domain family protein (.1.2) AT1G28200 258 / 1e-85 FIP1 FH interacting protein 1 (.1) AT4G40100 211 / 2e-67 GRAM domain family protein (.1) AT5G13200 165 / 6e-49 GRAM domain family protein (.1) AT4G01600 160 / 1e-47 GRAM domain family protein (.1.2) AT5G23370 127 / 5e-35 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G23350 124 / 3e-33 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G08350 122 / 4e-33 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G23360 120 / 2e-32 GRAM domain-containing protein / ABA-responsive protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035933 [exp] 517 / 0 AT2G22475 265 / 1e-86 GL2-EXPRESSION MODULATOR, GRAM domain family protein (.1.2) Lus10040539 [exp] 278 / 4e-93 AT1G28200 338 / 6e-118 FH interacting protein 1 (.1) Lus10000640 [exp] 274 / 2e-91 AT1G28200 333 / 5e-116 FH interacting protein 1 (.1) Lus10010279 [exp] 187 / 9e-58 AT2G22475 196 / 3e-62 GL2-EXPRESSION MODULATOR, GRAM domain family protein (.1.2) Lus10031986 [exp] 166 / 3e-49 AT5G13200 302 / 3e-103 GRAM domain family protein (.1) Lus10035154 [exp] 164 / 2e-48 AT5G13200 308 / 9e-106 GRAM domain family protein (.1) Lus10017372 [exp] 143 / 7e-41 AT5G08350 238 / 2e-79 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10010166 [exp] 142 / 2e-40 AT5G08350 233 / 1e-77 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10010167 [exp] 133 / 3e-37 AT5G08350 247 / 4e-83 GRAM domain-containing protein / ABA-responsive protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G159100 [exp] 272 / 1e-90 AT1G28200 295 / 2e-100 FH interacting protein 1 (.1) Potri.002G102800 [exp] 269 / 2e-89 AT1G28200 325 / 3e-112 FH interacting protein 1 (.1) Potri.002G184100 [exp] 213 / 2e-68 AT1G28200 219 / 7e-72 FH interacting protein 1 (.1) Potri.014G109700 [exp] 202 / 3e-64 AT1G28200 221 / 1e-72 FH interacting protein 1 (.1) Potri.003G165400 [exp] 174 / 3e-52 AT5G13200 350 / 6e-122 GRAM domain family protein (.1) Potri.003G165700 [exp] 169 / 2e-50 AT5G13200 326 / 1e-112 GRAM domain family protein (.1) Potri.003G165500 [exp] 166 / 2e-49 AT5G13200 328 / 3e-113 GRAM domain family protein (.1) Potri.003G165600 [exp] 164 / 3e-48 AT5G13200 323 / 1e-111 GRAM domain family protein (.1) Potri.001G323300 [exp] 158 / 4e-46 AT5G13200 290 / 2e-98 GRAM domain family protein (.1) Potri.007G075700 [exp] 139 / 2e-39 AT5G08350 240 / 3e-80 GRAM domain-containing protein / ABA-responsive protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF02893 [flax] [poplar] GRAM GRAM domain
Representative CDS sequence Show only first row Show all	>Lus10025728 pacid=23177437 polypeptide=Lus10025728 locus=Lus10025728.g ID=Lus10025728.BGIv1.0 annot-version=v1.0 ATGGACCAAAGATTTCCCAAGTCGGAAACAGAGCAAACAAAAACGGATTCCCCAGCGCTGCTCGATCCGAGATCCGACGTGGACGGCAAAATTGGAGAGA ATCGTCGTAACGAGCCGACGGGAGACTCTGGCAGTAAAAGCGGTATTATTTCGGGATCGGAGAATTCGCGGGCTTCAGAAGAAGCTCACCTTGAAGAATT GCAAGCGTCTTTTCGAGACGGATCGGGGAGGAAATCGGTTCGTTGGAGTCCTGACTTGGTGACTGATTCTCGAGCTTCAAACGGGAATGACAGCAATGAC GGATCGAATCCTTACATCTCGTCCTCTCCTGCTGGACCGTCAAATTCTGTTTCAATCAAAGGCAATTACAATGCTCTATGGTTTGTTGTTGGCTCAGAGC GGATTGGAAATGTGCGGGAATTCCTGGGGATGTTTGGGAGGAGAGTTGGAGAAGCTACGAAGAAGGCTGAGGATTTTGCCGGCAACACATGGCAACACTT GAAAACATCCCCTAGTTTTGCGGATGCTGCACTAGGAAGACTTGCTCAAGGAACAAAGGTGTTGGCAGAGGGAGGTTATGAGAAAATATTCCGGCAAACA TTTGAAACAGTTCCAGAGGAGGTGTTGCAAGATTCATTTGCTTGTTACCTATCAACATCAGCTGGTCCAGTTATGGGAGTTCTATACGTCTCCACAGCTA AGCTGGCATACTCTAGTGACAGCCCTCTTTCATATAAAGCAGATGGGAAAACAGAGTGGAGTTACTACAAGGTGGTGATACCGTTGCATCAGCTGAAGGC GGTAAAGCCATCGACAAGCAGGACGAATGCAGCAGAGAAATACGTGCAGGTGATATCAGTGGATAATCATGAATTTTGGTTCATGGGATTCTTAAACTAC AATGCTGCAGTCCAATGCCTAGAGGATGCCGCCATGCATGCCCAGAATTTAGCATCTGCATCATCATCATCATGA
AA sequence Show only first row Show all	>Lus10025728 pacid=23177437 polypeptide=Lus10025728 locus=Lus10025728.g ID=Lus10025728.BGIv1.0 annot-version=v1.0 MDQRFPKSETEQTKTDSPALLDPRSDVDGKIGENRRNEPTGDSGSKSGIISGSENSRASEEAHLEELQASFRDGSGRKSVRWSPDLVTDSRASNGNDSND GSNPYISSSPAGPSNSVSIKGNYNALWFVVGSERIGNVREFLGMFGRRVGEATKKAEDFAGNTWQHLKTSPSFADAALGRLAQGTKVLAEGGYEKIFRQT FETVPEEVLQDSFACYLSTSAGPVMGVLYVSTAKLAYSSDSPLSYKADGKTEWSYYKVVIPLHQLKAVKPSTSRTNAAEKYVQVISVDNHEFWFMGFLNY NAAVQCLEDAAMHAQNLASASSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22475		GEM	GL2-EXPRESSION MODULATOR, GRAM...		Lus10025728 [exp]	0	1
AT2G28370			Uncharacterised protein family...		Lus10037399 [exp]	2.6	0.8596
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Lus10005450 [exp]	4.5	0.8202
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10028127 [exp]	5.3	0.8005
AT3G60800			DHHC-type zinc finger family p...		Lus10009291 [exp]	9.3	0.7727
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10038342 [exp]	9.3	0.8267
AT5G47310			PPPDE putative thiol peptidase...		Lus10004372 [exp]	9.5	0.8026
AT3G16270			ENTH/VHS family protein (.1)		Lus10038289 [exp]	10.7	0.7967
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10013027 [exp]	11.2	0.8218
AT5G38895			RING/U-box superfamily protein...		Lus10005084 [exp]	13.2	0.8172
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10021202 [exp]	13.3	0.8159

Compare expression of checked genes

Lus10025728 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.